PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015901953.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | ERF | ||||||||
Protein Properties | Length: 216aa MW: 23033.4 Da PI: 4.8629 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.6 | 2.7e-17 | 45 | 93 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+Wv+eIr+p+ + r++lg+f t+e+Aa a++ a+++l+g XP_015901953.1 45 YRGVRRRS-SGKWVSEIREPR----KpNRIWLGTFSTPEMAAVAYDVAALALKG 93 9****888.8*********94....478***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-30 | 44 | 103 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-33 | 44 | 107 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.655 | 44 | 101 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-21 | 44 | 103 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.9E-10 | 45 | 93 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.86E-30 | 45 | 103 | No hit | No description |
PRINTS | PR00367 | 4.8E-11 | 45 | 56 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-11 | 83 | 103 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MHYSTPNTTS NSTGSTITTI SSSTSRNNAY PPPFSTSAGR NNRTYRGVRR RSSGKWVSEI 60 REPRKPNRIW LGTFSTPEMA AVAYDVAALA LKGKDAELNF PDSASSLPVP ASTSPRDIQA 120 AAGSAAAAIG AAAAAMGEAK KDIVGSSANW GNQAEEDTGE AVGRPDFLDE DLIFDMPNVL 180 VNMAEGMLLS PPRLDLSGDY THDYESTGDQ NLWKFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 44 | 101 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015901953.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015901953.1 | 1e-157 | ethylene-responsive transcription factor ERF024 | ||||
Swissprot | Q9SJR0 | 8e-54 | ERF24_ARATH; Ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | A0A498I2J9 | 4e-72 | A0A498I2J9_MALDO; Uncharacterized protein | ||||
STRING | POPTR_0006s02180.1 | 5e-72 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF562 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36450.1 | 2e-39 | ERF family protein |