PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015901948.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 229aa    MW: 25397.5 Da    PI: 5.3851
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015901948.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.17e-1660110156
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     + ykGVr++  +g+Wv+e+r p   +k+ r+++g+f  +++Aa+a++ a+++l+ge
  XP_015901948.1  60 PVYKGVRQR--NGKWVCELRQP---NKKSRVWVGTFPCPDMAARAYDVAALALKGE 110
                     68****975..6******9998...347*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-1260110IPR001471AP2/ERF domain
PROSITE profilePS5103219.13761117IPR001471AP2/ERF domain
SMARTSM003801.1E-2561123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-2661118IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-1761119IPR016177DNA-binding domain
CDDcd000186.56E-2762119No hitNo description
PRINTSPR003675.7E-76273IPR001471AP2/ERF domain
PRINTSPR003675.7E-799119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MLSIIMNFGG QSSSSTSSGH VNYTPSSQSG NSWATDHMQT NNVVKKRKAG RKKFQETRHP  60
VYKGVRQRNG KWVCELRQPN KKSRVWVGTF PCPDMAARAY DVAALALKGE SASLNFPDDV  120
NAIPRIQSLS SIRDIQCTAA ETAEAFAEVK ETTSSSTSTS SSAAWFSMES LEVEMGATRK  180
VYMDEDELFN MPALLNSMAE GLILTPPAMK KEFDWDDLEE TVDFSLWSD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015901948.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015901948.11e-172dehydration-responsive element-binding protein 1B-like
SwissprotQ9FJ934e-50DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A2N9G2V27e-83A0A2N9G2V2_FAGSY; Uncharacterized protein
STRINGXP_008241428.13e-78(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.13e-37C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]