PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015901853.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 196aa MW: 21567.6 Da PI: 8.7312 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.1 | 2.6e-19 | 28 | 74 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +e + +r+vtfskR++gi+ KA ELSvL++ae+av+ fs +gk + + XP_015901853.1 28 VEAHNKRHVTFSKRKHGIFNKAAELSVLTGAEIAVMAFSRHGKAFAF 74 678899************************************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.3E-27 | 18 | 77 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.493 | 18 | 78 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.84E-23 | 19 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-16 | 20 | 40 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-18 | 29 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-16 | 40 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-16 | 55 | 76 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MASMNSGSMP ENEKKTSKGR QKIEIKMVEA HNKRHVTFSK RKHGIFNKAA ELSVLTGAEI 60 AVMAFSRHGK AFAFGSPGFE AVVQKYLGQG CTADNHDYSL SSSVTCHASK VQYLAAMKLL 120 EVETRCGDQK MSKQKSKEVE EAASSCSGNG NNGGFWWDCP IESMDLEELK QWLVSLQELK 180 DMVEKKAAGQ IITKPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mnm_A | 7e-20 | 1 | 91 | 1 | 89 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
1mnm_B | 7e-20 | 1 | 91 | 1 | 89 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015901853.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015901213.1 | 1e-145 | agamous-like MADS-box protein AGL61 | ||||
Refseq | XP_015901853.1 | 1e-145 | agamous-like MADS-box protein AGL61 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-23 | AGAMOUS-like 62 |