PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015901626.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 478aa    MW: 54881.7 Da    PI: 8.9779
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015901626.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.65.1e-09432453426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      lCr++a+ G C yGd+CkF+Hg
  XP_015901626.1 432 QLCRYYAK-GRCYYGDNCKFSHG 453
                     69******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF689062.2E-788132No hitNo description
Gene3DG3DSA:1.10.720.308.8E-1088132IPR003034SAP domain
SMARTSM005135.4E-497131IPR003034SAP domain
PfamPF020374.2E-1097131IPR003034SAP domain
PROSITE profilePS5080010.12697131IPR003034SAP domain
Gene3DG3DSA:4.10.1000.108.8E-8423456IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-7427453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.887428455IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-5429454IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-6432453IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MAVYELSNCY QMDLEEDDSF GSEDGYSSED SENDRDYNVV EETLGRFSNL SVKKKSETRF  60
VSYPIDSDPR EIVVPELDKS DEKSFELVQK IIGDGQLEKL KVEQCKVYLR KNGLRLTGNK  120
ETLIQRIKEH FEILNGGGEK KYPPSSFVLN CKGDACTGDV VMFEQNVYEM FNLASRSASG  180
PPCGTRIVAG RIVKESYGAA KQQHTFTIEV LWSKGEKPLP PLHPLLIKGR NLYRLKTVRQ  240
RWDNEGKRHE ILMEKHQRGS LARSDREARI EEKEKKKRLK ADRMSRKEST KNQSNCNSTL  300
APKSSSQPQR SGLSVNPGMP YFHTQRSSGA YANSKVPAEK VVKPINQASE EMVEYRTLPD  360
WERIYTEIED VKHMSKDEVA GGRRMFHLND NQGSVNTFLS TNRTDGFPLS HRQPLTTMNG  420
FRPTRQHSMQ QQLCRYYAKG RCYYGDNCKF SHGTREEHGQ RTEQRLPLHH TCSNNTRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015901626.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015901626.10.0zinc finger CCCH domain-containing protein 62-like isoform X1
TrEMBLA0A2N9EQG41e-155A0A2N9EQG4_FAGSY; Uncharacterized protein
STRINGXP_004305763.11e-151(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116522224