PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015901326.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRF
Protein Properties Length: 328aa    MW: 37138.8 Da    PI: 9.1721
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015901326.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC72.64.4e-2366109144
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                     d+epgrCrRtDGKkWRCs+++ +++k+CErH++rgr rsrk +e
  XP_015901326.1  66 DPEPGRCRRTDGKKWRCSKDAHPDSKYCERHMNRGRYRSRKLVE 109
                     79***************************************987 PP
2QLQ60.35.5e-21440137
             QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    s+FT aQ+q+L++Q+l++KyL a++PvPp+Ll++i+k
  XP_015901326.1  4 SPFTVAQWQELEHQALIFKYLKAGLPVPPDLLAPIRK 40
                    89*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.6E-12440IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.8E-15539IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.988540IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.72166110IPR014977WRC domain
PfamPF088797.3E-2067109IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSGSPFTVAQ WQELEHQALI FKYLKAGLPV PPDLLAPIRK SFQLTSPRFF RHPTLGYCSY  60
FGKKIDPEPG RCRRTDGKKW RCSKDAHPDS KYCERHMNRG RYRSRKLVEL KTNSQSLSTV  120
SSDIATGSNT SSGSFQNMPL HSVGNRRALC LPSQVVVDPL PYGISNNEYR CYRGLNPEAE  180
KRNFLMEASG NMSLEINNTV DNSWRLMTSH VPMNSSEPRN SSLFPSNSRQ LETFQDIEPL  240
NVDAAMPKQE QYRCFFGKDL GSLESPKEEH QLLQPLFDPW PKMRDLGSHI DDHRSNKNLV  300
TATQLSMSSP TASNLFARSA QSPNDAYG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015901326.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015897345.10.0growth-regulating factor 4-like isoform X2
RefseqXP_015901326.10.0growth-regulating factor 4-like isoform X2
TrEMBLA0A2P6PAZ91e-132A0A2P6PAZ9_ROSCH; Putative transcription factor interactor and regulator C3H-WRC/GRF family
STRINGXP_008238100.11e-127(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47812951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.15e-42growth-regulating factor 5