PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015901213.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

M-type_MADS

Protein Properties

Length: 196aa MW: 21567.6 Da PI: 8.7312

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015901213.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60.1	2.6e-19	28	74	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +e + +r+vtfskR++gi+ KA ELSvL++ae+av+ fs +gk + + XP_015901213.1 28 VEAHNKRHVTFSKRKHGIFNKAAELSVLTGAEIAVMAFSRHGKAFAF 74 678899************************************98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.3E-27	18	77	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.493	18	78	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.84E-23	19	88	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-16	20	40	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.6E-18	29	74	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-16	40	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-16	55	76	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MASMNSGSMP ENEKKTSKGR QKIEIKMVEA HNKRHVTFSK RKHGIFNKAA ELSVLTGAEI 60 AVMAFSRHGK AFAFGSPGFE AVVQKYLGQG CTADNHDYSL SSSVTCHASK VQYLAAMKLL 120 EVETRCGDQK MSKQKSKEVE EAASSCSGNG NNGGFWWDCP IESMDLEELK QWLVSLQELK 180 DMVEKKAAGQ IITKPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mnm_A	7e-20	1	91	1	89	PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B	7e-20	1	91	1	89	PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015901213.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015901213.1	1e-145	agamous-like MADS-box protein AGL61
Refseq	XP_015901853.1	1e-145	agamous-like MADS-box protein AGL61

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF128	33	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	1e-23	AGAMOUS-like 62