PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015901029.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

G2-like

Protein Properties

Length: 314aa MW: 34491 Da PI: 7.0008

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015901029.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.1	4.2e-33	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl XP_015901029.1 46 KPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.468	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.6E-32	43	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-23	46	101	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.77E-16	46	102	IPR009057	Homeodomain-like
Pfam	PF00249	3.0E-7	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	7.1E-15	141	186	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MYPQLIQHHE RMVGQDDIQI QGGATATHNQ NSHRGDPCLV LTSDPKPRLR WTADLHERFV 60 DAVTQLGGAS KATPKAIMRT MNVKGLTLFH LKSHLQKYRL GKQSGKDMID VTKDASYLLE 120 NPGTGNSSPT LPTSDINEGY EVKEALRAQM EVQSKLHLQV EAEKHLQIRQ NAERRYMAML 180 ERACKMLADQ FIGGSVIDTD SNKYQGLGSK IPRSSSIDAL GFYSLQSAEV AGVQVPEEVP 240 TSLHPQRADC STESCLTSHE SPGGLTLEGS PGAGKKSIMS LESTQPLIWS ETKVRIQEHN 300 VPQVDPHGIS GYGI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-18	46	102	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-18	46	102	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-18	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-18	46	102	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-18	46	102	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-18	46	102	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-18	46	102	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-18	46	102	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-18	46	102	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015901029.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015901029.1	0.0	protein PHR1-LIKE 3-like isoform X2
Refseq	XP_015901033.1	0.0	protein PHR1-LIKE 3-like isoform X2
Swissprot	Q94A57	2e-64	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A2P5DY68	0.0	A0A2P5DY68_TREOI; Octamer-binding transcription factor
STRING	XP_008224659.1	1e-175	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	9e-67	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]