PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015901022.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

G2-like

Protein Properties

Length: 317aa MW: 34846.4 Da PI: 6.8438

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015901022.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105	4.2e-33	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl XP_015901022.1 46 KPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.468	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.8E-32	43	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.79E-16	46	102	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-23	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	3.0E-7	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	7.2E-15	144	189	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MYPQLIQHHE RMVGQDDIQI QGGATATHNQ NSHRGDPCLV LTSDPKPRLR WTADLHERFV 60 DAVTQLGGAS KATPKAIMRT MNVKGLTLFH LKSHLQKYRL GKQSGKDMID VTKDEILASY 120 LLENPGTGNS SPTLPTSDIN EGYEVKEALR AQMEVQSKLH LQVEAEKHLQ IRQNAERRYM 180 AMLERACKML ADQFIGGSVI DTDSNKYQGL GSKIPRSSSI DALGFYSLQS AEVAGVQVPE 240 EVPTSLHPQR ADCSTESCLT SHESPGGLTL EGSPGAGKKS IMSLESTQPL IWSETKVRIQ 300 EHNVPQVDPH GISGYGI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-18	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015901022.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015901013.1	0.0	protein PHR1-LIKE 3-like isoform X1
Refseq	XP_024935221.1	0.0	protein PHR1-LIKE 3-like isoform X1
Refseq	XP_024935223.1	0.0	protein PHR1-LIKE 3-like isoform X1
TrEMBL	A0A2P5DY68	1e-179	A0A2P5DY68_TREOI; Octamer-binding transcription factor
STRING	XP_008224659.1	1e-173	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-64	G2-like family protein