PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015900875.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 140aa MW: 15838 Da PI: 10.3104 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 48.8 | 1.5e-15 | 11 | 91 | 18 | 97 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 + e+P r+kki+k d d++++ +ea l+s + elf+ l+ rs a e+kr+t+k + av+r + dfl+d p XP_015900875.1 11 RPEFPNGRVKKIMKLDRDINKVNSEALFLVSSSAELFLGFLAERSAKVAVEKKRKTVKLEHMRLAVKRHRpTSDFLLDSLP 91 5689**************************************************************9975389*****987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.1E-19 | 6 | 77 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.14E-18 | 11 | 94 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-18 | 13 | 76 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 140 aa Download sequence Send to blast |
MAEEEETGKI RPEFPNGRVK KIMKLDRDIN KVNSEALFLV SSSAELFLGF LAERSAKVAV 60 EKKRKTVKLE HMRLAVKRHR PTSDFLLDSL PLPPQPSDQP ATERSRSRSV ADNSAPAGTR 120 RIDDFFHKPN NEAQVQINES |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015900875.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015894354.1 | 1e-97 | nuclear transcription factor Y subunit gamma-like | ||||
Refseq | XP_015900875.1 | 1e-97 | nuclear transcription factor Y subunit gamma-like | ||||
TrEMBL | A0A2N9HE56 | 3e-71 | A0A2N9HE56_FAGSY; Uncharacterized protein | ||||
STRING | Gorai.005G168300.1 | 4e-65 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11105 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G43250.1 | 8e-47 | nuclear factor Y, subunit C13 |