PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015900469.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 344aa MW: 39458.4 Da PI: 4.8323 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.3 | 8.2e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++ +s XP_015900469.1 9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSLFS 58 79*******************************************98776 PP | |||||||
2 | K-box | 14.1 | 2e-06 | 106 | 170 | 8 | 70 |
K-box 8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 s ++++ e+ qqe+ k+++e++++ ++ + G+ e +l + + eq Le+ l+++R +K+ XP_015900469.1 106 SpmSTDSQLEEIQQEILCCKSQLEEMENRLKIFEGDPSEITTLSDAEYREQILEETLRRVRMRKQ 170 34468999****************************9888888888899**************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.829 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-30 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.89E-38 | 2 | 76 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.7E-26 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MGRVKLQIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRVSLFSGN 60 KSIEEILARY VNLPENERGR LHNQEFLQRA LGKLRSEGDQ TYQTPSPMST DSQLEEIQQE 120 ILCCKSQLEE MENRLKIFEG DPSEITTLSD AEYREQILEE TLRRVRMRKQ VLENYNSGGA 180 QLTNQVHLLT PETANIEKLV AASSHNILDW LPQRDPQVQI LNFLDANGLL PLRDEPQRGV 240 EMLPPAATLD GQNMINVDDQ IRPRINLEDD NNNNPQRPDE LAQIVDVNLP PWAEFFSRTI 300 DTRDGSEFPV AQPEPEGRSV FHEFYMSQYT PSTILAPDHR QHHT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 3e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6c9l_A | 3e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 162 | 169 | RRVRMRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015900469.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015884985.1 | 0.0 | agamous-like MADS-box protein AGL104 isoform X1 | ||||
Refseq | XP_015900469.1 | 0.0 | agamous-like MADS-box protein AGL104 isoform X1 | ||||
Swissprot | Q9LM46 | 4e-52 | AG104_ARATH; Agamous-like MADS-box protein AGL104 | ||||
TrEMBL | E0CPM9 | 1e-149 | E0CPM9_VITVI; Uncharacterized protein | ||||
STRING | VIT_18s0001g09540.t01 | 1e-150 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13665 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 2e-54 | AGAMOUS-like 104 |
Publications ? help Back to Top | |||
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