PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015900469.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MIKC_MADS
Protein Properties Length: 344aa    MW: 39458.4 Da    PI: 4.8323
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015900469.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.38.2e-28958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++  +s
  XP_015900469.1  9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSLFS 58
                    79*******************************************98776 PP

2K-box14.12e-06106170870
           K-box   8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                     s   ++++ e+ qqe+   k+++e++++ ++ + G+  e  +l + +  eq Le+ l+++R +K+
  XP_015900469.1 106 SpmSTDSQLEEIQQEILCCKSQLEEMENRLKIFEGDPSEITTLSDAEYREQILEETLRRVRMRKQ 170
                     34468999****************************9888888888899**************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.829161IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-30281IPR002100Transcription factor, MADS-box
CDDcd002653.89E-38276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-25323IPR002100Transcription factor, MADS-box
PfamPF003195.7E-261055IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGRVKLQIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRVSLFSGN  60
KSIEEILARY VNLPENERGR LHNQEFLQRA LGKLRSEGDQ TYQTPSPMST DSQLEEIQQE  120
ILCCKSQLEE MENRLKIFEG DPSEITTLSD AEYREQILEE TLRRVRMRKQ VLENYNSGGA  180
QLTNQVHLLT PETANIEKLV AASSHNILDW LPQRDPQVQI LNFLDANGLL PLRDEPQRGV  240
EMLPPAATLD GQNMINVDDQ IRPRINLEDD NNNNPQRPDE LAQIVDVNLP PWAEFFSRTI  300
DTRDGSEFPV AQPEPEGRSV FHEFYMSQYT PSTILAPDHR QHHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-17175174Myocyte-specific enhancer factor 2B
1tqe_Q3e-17175174Myocyte-specific enhancer factor 2B
1tqe_R3e-17175174Myocyte-specific enhancer factor 2B
1tqe_S3e-17175174Myocyte-specific enhancer factor 2B
6c9l_A3e-17175174Myocyte-specific enhancer factor 2B
6c9l_B3e-17175174Myocyte-specific enhancer factor 2B
6c9l_C3e-17175174Myocyte-specific enhancer factor 2B
6c9l_D3e-17175174Myocyte-specific enhancer factor 2B
6c9l_E3e-17175174Myocyte-specific enhancer factor 2B
6c9l_F3e-17175174Myocyte-specific enhancer factor 2B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162169RRVRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015900469.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884985.10.0agamous-like MADS-box protein AGL104 isoform X1
RefseqXP_015900469.10.0agamous-like MADS-box protein AGL104 isoform X1
SwissprotQ9LM464e-52AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLE0CPM91e-149E0CPM9_VITVI; Uncharacterized protein
STRINGVIT_18s0001g09540.t011e-150(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136651922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.12e-54AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]