PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015900360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | TCP | ||||||||
Protein Properties | Length: 373aa MW: 41181.8 Da PI: 9.6157 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 103.3 | 4e-32 | 55 | 202 | 2 | 130 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ + ++++s +s + g XP_015900360.1 55 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKQEIDELPPLPVPPGNIGLNHHQSLLTSREAGGttmqtnee 149 689*************************************************************8888855533333333332222222222223 PP TCP 89 ..........kaaksaakskksqksaasalnlakesr.......................akarararertrekm 130 + +sr a++ a+++er++ ++ XP_015900360.1 150 qegfrnmvgwE----------------------GSSRlprsnnfwnsdalwrarskevvvAREMANNNERDKAEQ 202 33332233221......................122233333333333232233333322333333333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 31.02 | 57 | 115 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.0E-29 | 57 | 201 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MITSTSKEGD NLQPREEAGN STRTDHHGKV TKALSNSTPW LRLKDPRIVR VSRAFGGKDR 60 HSKVCTIRGL RDRRVRLSVP TAIQLYDLQD RLGLNQPSKV VDWLLNAAKQ EIDELPPLPV 120 PPGNIGLNHH QSLLTSREAG GTTMQTNEEQ EGFRNMVGWE GSSRLPRSNN FWNSDALWRA 180 RSKEVVVARE MANNNERDKA EQNNDQNNLL QRTGNHPFLP GLLNNAAPYG YHWDPSSSNY 240 LVPPPHLGGH GFTPPSQADH LHNLNIMSAP STLSLSTGSQ FLVCPPPTGI TQPYFPNSNS 300 AAAASGEIDA RQVVSHFQML SSTSTTDTAT TTPIYPNCQS MRPFHFSVNS KLVHSPNSSG 360 STQPNKSREF SSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 9e-19 | 62 | 116 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 9e-19 | 62 | 116 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015900360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015900360.1 | 0.0 | transcription factor TCP13-like isoform X1 | ||||
TrEMBL | A0A061EN21 | 1e-126 | A0A061EN21_THECC; Plastid transcription factor 1, putative isoform 1 | ||||
STRING | EOY03699 | 1e-127 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.2 | 5e-56 | plastid transcription factor 1 |