PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015900171.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | ERF | ||||||||
Protein Properties | Length: 293aa MW: 32195.7 Da PI: 8.103 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.9 | 6.8e-20 | 28 | 77 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d s +r r +lg+++t+eeAa+a+++a+++l+g XP_015900171.1 28 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRG 77 589******.7*********43...36*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.534 | 28 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.46E-32 | 28 | 87 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.0E-28 | 28 | 85 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.9E-15 | 28 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-36 | 28 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-7 | 29 | 40 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.41E-20 | 29 | 86 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.9E-7 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MAGPELTKAA LPTTTTMAQT TRPAAVRRFV GVRQRPSGRW VAEIKDSSQR VRLWLGTYDT 60 PEEAARAYDE AARALRGSNA RTNFAATTSS VNPNSNPLVS TPCMNNDGTI AGSGSDGRHG 120 LMSFSSLKAK LSKNLQSIMA RTSENNKSSK SRVSDHFTFA SIFQFRKYQY QNPLMDHMRN 180 MNIDHKAVQP SIIVPSHLDQ TSEPCSWESS SVSDCSTEWV GFRQPGFDSD GSDIGEGFVD 240 HQMMGWMDSP EMSSSISNNS SEMGSRSKRF KVSSSVVVPP TFSESPYDGH EIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-13 | 28 | 84 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015900171.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015900171.1 | 0.0 | dehydration-responsive element-binding protein 2B-like | ||||
TrEMBL | A0A2I4FF70 | 1e-118 | A0A2I4FF70_JUGRE; ethylene-responsive transcription factor ABR1-like | ||||
STRING | XP_008391659.1 | 1e-118 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8324 | 31 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 3e-17 | related to AP2 11 |