PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015900129.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

SBP

Protein Properties

Length: 1044aa MW: 116395 Da PI: 7.7277

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015900129.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.9	9.2e-41	156	232	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqve+C+adls+ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+ XP_015900129.1 156 VCQVEDCRADLSNAKDYHRRHKVCDMHSKASKALVGNVMQRFCQQCSRFHVLKEFDEGKRSCRRRLAGHNRRRRKTL 232 6*************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.4E-32	151	218	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.017	154	231	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.14E-37	156	236	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.9E-29	157	230	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	2.63E-8	811	926	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	4.0E-7	813	926	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.37E-8	814	925	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1044 aa Download sequence Send to blast
MDLKLKEAAV LEKLILVGGD LKAIGKKSLE WALTDWSWDG DLFRASPLNS IPSDCRSRQL 60 FPVGPETPAA APACAGLPNS SSFSGPETDD IEPGIEKGKR ELEKRRRPAF VDDAELSLED 120 GSLNLKLGGE AYPILEGELK SGKKTKIVGT ASNRSVCQVE DCRADLSNAK DYHRRHKVCD 180 MHSKASKALV GNVMQRFCQQ CSRFHVLKEF DEGKRSCRRR LAGHNRRRRK TLPETVVNGS 240 SLNDERGSSY LLISLLRILS NMHTNSSDQT KDQDLLSHLL RSLANFTGTV DGRNISALLQ 300 GSQGLLNAEK SVDTSQKRVD MISNGPEPSR PSASGSKVDN SVNLEDHLRS MRQCQTVPAS 360 DMAQRRTPCD DNDGGNVKSI IGPGSTYPSY LREGLPTQSI IPETTNGRMN FNNIDLNSVY 420 DDSQDCIENL GNSHLPLNSG TMPLNKPLWI QHGSNKSSPP HPSGNSDSIS TQSPSSSSGE 480 AQSRTDRIVF KLFGKDPNDL PFILRKQILD WLSHSPTDIE SYIRPGCIIL TIYLHLEKSA 540 WEELCCNLGS SLKRLLEASN DPFWRTGWAY ARLQHFVAFM YNGHVVLDTP LPLKSHKNCR 600 VSSIKPIAVS TSKRAQFIVK GFNLSRSTTR LLCALEGKYL VQGSCHELMD STDTANERDE 660 IDCLRFSCNV PSIIGRGFIE VENHGLSSSF FPFIVAEQEV CSEICMLEGE IDDTETTDDV 720 RREPGNMEAK KQALDFIHEM GWLLHRSRAK LRLGHMDPNL DLFPFRRFRW LMEFSMEHDW 780 CSVVKKLLGI LFEGTVDAGE HPSIEVAVLD LGLLHKAVQR NCRPMVELLL KFVPDKVLDN 840 MGPKESERVE RGFKSFLFKP NVVGPMGLTP LHDAASRDGC EDVLDALTND PGKVGIEAWK 900 NAKDNTGLTP NDYACLRGYY SYIHLVQKKI SGRSESGHVA VDIPGTILDC NSKQKQLDGH 960 RLSKVASLET ERFDMKATIK EKCRVCERKL VYGSRRSLVY RPAMLSMVAI AALCVCVALL 1020 FKSSPEVVYV FQPFRWERLK YGSS

Sequence ? help Back to Top

Protein Sequence Length: 1044 aa Download sequence Send to blast

MDLKLKEAAV LEKLILVGGD LKAIGKKSLE WALTDWSWDG DLFRASPLNS IPSDCRSRQL  60
FPVGPETPAA APACAGLPNS SSFSGPETDD IEPGIEKGKR ELEKRRRPAF VDDAELSLED  120
GSLNLKLGGE AYPILEGELK SGKKTKIVGT ASNRSVCQVE DCRADLSNAK DYHRRHKVCD  180
MHSKASKALV GNVMQRFCQQ CSRFHVLKEF DEGKRSCRRR LAGHNRRRRK TLPETVVNGS  240
SLNDERGSSY LLISLLRILS NMHTNSSDQT KDQDLLSHLL RSLANFTGTV DGRNISALLQ  300
GSQGLLNAEK SVDTSQKRVD MISNGPEPSR PSASGSKVDN SVNLEDHLRS MRQCQTVPAS  360
DMAQRRTPCD DNDGGNVKSI IGPGSTYPSY LREGLPTQSI IPETTNGRMN FNNIDLNSVY  420
DDSQDCIENL GNSHLPLNSG TMPLNKPLWI QHGSNKSSPP HPSGNSDSIS TQSPSSSSGE  480
AQSRTDRIVF KLFGKDPNDL PFILRKQILD WLSHSPTDIE SYIRPGCIIL TIYLHLEKSA  540
WEELCCNLGS SLKRLLEASN DPFWRTGWAY ARLQHFVAFM YNGHVVLDTP LPLKSHKNCR  600
VSSIKPIAVS TSKRAQFIVK GFNLSRSTTR LLCALEGKYL VQGSCHELMD STDTANERDE  660
IDCLRFSCNV PSIIGRGFIE VENHGLSSSF FPFIVAEQEV CSEICMLEGE IDDTETTDDV  720
RREPGNMEAK KQALDFIHEM GWLLHRSRAK LRLGHMDPNL DLFPFRRFRW LMEFSMEHDW  780
CSVVKKLLGI LFEGTVDAGE HPSIEVAVLD LGLLHKAVQR NCRPMVELLL KFVPDKVLDN  840
MGPKESERVE RGFKSFLFKP NVVGPMGLTP LHDAASRDGC EDVLDALTND PGKVGIEAWK  900
NAKDNTGLTP NDYACLRGYY SYIHLVQKKI SGRSESGHVA VDIPGTILDC NSKQKQLDGH  960
RLSKVASLET ERFDMKATIK EKCRVCERKL VYGSRRSLVY RPAMLSMVAI AALCVCVALL  1020
FKSSPEVVYV FQPFRWERLK YGSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-29	156	230	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015900129.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ622309	4e-54	KJ622309.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015900129.1	0.0	squamosa promoter-binding-like protein 12
TrEMBL	M5XKZ8	0.0	M5XKZ8_PRUPE; Uncharacterized protein
STRING	XP_008223488.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1