PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015899771.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Dof

Protein Properties

Length: 503aa MW: 55484.9 Da PI: 6.5007

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015899771.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	4.9e-39	119	177	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k+l+cprC+s++tkfCy+nny+++qPryfCk+C+ryWt+GG++rnvP+G+grrknk+ XP_015899771.1 119 PDKILPCPRCNSSDTKFCYFNNYNVNQPRYFCKNCQRYWTAGGTMRNVPIGAGRRKNKH 177 7899*****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-29	111	176	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.4E-32	121	177	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.64	123	177	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	125	161	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MSESNSNGDN IINCTTDQAI KLFGRTIPVP EIQISDNSDS ASRIPPTTQL MESCGDISKT 60 EVDSPCAESF REPRKLLGLS NCKEQKNSLQ VNEAQENTKP VEEKVDGNCS EQEQILKKPD 120 KILPCPRCNS SDTKFCYFNN YNVNQPRYFC KNCQRYWTAG GTMRNVPIGA GRRKNKHLAP 180 QYHQIMVSTD GVPPAGLETS DASSPQVFSC SESKPSFNPS NGNGRVIKFG PEAPLCESME 240 NVLNLQDYKR YVEMRFVNSG ENGPERSCGS SMTLTSDRRS ELPENVLPSE KVGLQEYSQE 300 HNSMLHPMHY PVPPLVFSWN PASSSSQYSQ GIFVPNGGPN QAQWNQPPML TVPGHSSMPF 360 PFLPASYWGC IPSWASGRGS VSLTESINCP SPSSSNSNGG CSGNGSPTLG KHSRDANLMD 420 EDKLDKSILV PKTIRLDKPN EASKIPKWST LEIKPDQNES VLKGNIFRTL EHKTEGKDHL 480 YSSPIMEANN VTLSCSHTFQ QST

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MSESNSNGDN IINCTTDQAI KLFGRTIPVP EIQISDNSDS ASRIPPTTQL MESCGDISKT  60
EVDSPCAESF REPRKLLGLS NCKEQKNSLQ VNEAQENTKP VEEKVDGNCS EQEQILKKPD  120
KILPCPRCNS SDTKFCYFNN YNVNQPRYFC KNCQRYWTAG GTMRNVPIGA GRRKNKHLAP  180
QYHQIMVSTD GVPPAGLETS DASSPQVFSC SESKPSFNPS NGNGRVIKFG PEAPLCESME  240
NVLNLQDYKR YVEMRFVNSG ENGPERSCGS SMTLTSDRRS ELPENVLPSE KVGLQEYSQE  300
HNSMLHPMHY PVPPLVFSWN PASSSSQYSQ GIFVPNGGPN QAQWNQPPML TVPGHSSMPF  360
PFLPASYWGC IPSWASGRGS VSLTESINCP SPSSSNSNGG CSGNGSPTLG KHSRDANLMD  420
EDKLDKSILV PKTIRLDKPN EASKIPKWST LEIKPDQNES VLKGNIFRTL EHKTEGKDHL  480
YSSPIMEANN VTLSCSHTFQ QST

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015899771.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015899771.1	0.0	cyclic dof factor 3-like
TrEMBL	A0A1Q3D141	1e-168	A0A1Q3D141_CEPFO; Zf-Dof domain-containing protein
STRING	POPTR_0013s06290.1	1e-159	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-58	cycling DOF factor 2