PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015899687.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 253aa MW: 27621.5 Da PI: 4.9724 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.1 | 6.3e-15 | 13 | 55 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i k nr v+fskRr+g++KKAeE L++ +a+i++s+ g+ XP_015899687.1 13 IGKKENRMVSFSKRRKGLIKKAEEFHSLTGSSIALIVISEAGR 55 67899***********************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.7E-16 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.754 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.07E-18 | 4 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-10 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-16 | 13 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-10 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-10 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MGKGKRKLPM ELIGKKENRM VSFSKRRKGL IKKAEEFHSL TGSSIALIVI SEAGRPSVYG 60 APSFDSVLHR FQLQHNNNNN NNNNDGGILS SAHSNSHTTP TPETLFIGGS NQEDEDLVVV 120 ADQQPWPPET LDLPHDHHRH SFDAPPSELL LIPQGGGSTT APSLPMAEDD NCLFDIDTLL 180 LLLDGKAEDN AAVNGTDPYH TPDDYENAVV VADQEPSPTA FALPHDHYSF YASPPDQVVH 240 RGSKENNAAF PVF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015899687.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015899687.1 | 0.0 | transcription factor of morphogenesis MCM1-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16481 | 5 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 4e-16 | AGAMOUS-like 29 |