PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015899667.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family M-type_MADS
Protein Properties Length: 254aa    MW: 27879.8 Da    PI: 5.4457
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015899667.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.42.4e-151355345
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    i  k nr vtfskRr+g++KKAeE   L++  +a+i++s+ g+
  XP_015899667.1 13 IGKKENRMVTFSKRRKGLIKKAEEFHSLTGSSIALIVISEAGR 55
                    67899***********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.119363IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-16362IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-19481IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-11525IPR002100Transcription factor, MADS-box
PfamPF003193.1E-171356IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-112540IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-114061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGKGKRKLPM ELIGKKENRM VTFSKRRKGL IKKAEEFHSL TGSSIALIVI SEAGRPSIYG  60
APSFDSVLHR FQLQHNNNNN NNNNDEGILS SAHSNSHTTP TPETLFIGGS NQEDENLVVV  120
ADQEPWPPET LDLPHDHHRH SFDAPPSELL LIPQGGGSTT APSVPMAEDD NCLFDIDTLL  180
LLLDGKAEDN AAVNGTHPYH TPDDYENAVV VADQEPSPTA FALPHHHYSF YASPPDQVVH  240
RGSKENNAAF PIFN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015899667.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899667.10.0myocyte-specific enhancer factor 2C-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1648159
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-16AGAMOUS-like 29