PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015899372.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | ERF | ||||||||
Protein Properties | Length: 280aa MW: 31071.5 Da PI: 5.2075 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58 | 2.4e-18 | 34 | 83 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d + ++ r +lg+f taeeAa+a+++a+ l+g XP_015899372.1 34 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 83 799******.7*********32...35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.4E-19 | 34 | 91 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.585 | 34 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-28 | 34 | 91 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.3E-36 | 34 | 97 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.69E-32 | 34 | 90 | No hit | No description |
Pfam | PF00847 | 5.5E-13 | 34 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-8 | 35 | 46 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-8 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MEIQFQRPKD DPKSGIPTSR MGKFRGRSRN NTNKFVGVRQ RPSGRWVAEI KDTTQKIRMW 60 LGTFETAEEA ARAYDEAACL LRGSNTRTNF ITHVSMDSPL ASRIRNLLDS KKGTSKQKQI 120 VVEAPAPVTS STSKLVTNNA CTSTGTSSSS STGSDGANSN TSGIFQDTQF FDDAYKPDLS 180 NCNNDQEFEL TSSQSDLSWG GFGQGFDRFS FTQQVLDLPK NATTMTEAAD SEFLEFERMK 240 VERQISASLY AMNGVQEYME TVHDPTEALW DLPPLCSLLC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 33 | 100 | 13 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015899372.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015899372.1 | 0.0 | ethylene-responsive transcription factor RAP2-11-like | ||||
Swissprot | A0A1X9PY88 | 1e-113 | ERN1_LOTJA; Ethylene-responsive transcription factor ERN1 | ||||
TrEMBL | A0A438JL41 | 1e-123 | A0A438JL41_VITVI; Ethylene-responsive transcription factor RAP2-11 | ||||
TrEMBL | D7TI77 | 1e-123 | D7TI77_VITVI; Uncharacterized protein | ||||
STRING | VIT_08s0007g07250.t01 | 1e-123 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3341 | 30 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-30 | related to AP2 11 |
Publications ? help Back to Top | |||
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