PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015899326.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family TCP
Protein Properties Length: 445aa    MW: 48612.1 Da    PI: 6.4182
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015899326.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.22.4e-37852182100
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 
                      +k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++++a ++  +++ +        +       
  XP_015899326.1  85 QPKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTIPAIAMsVNGTLKI-------Pttapnpe 172
                     6899************************************************************7777733321111111.......11111111 PP

             TCP  89 ..................................kaaksaakskks 100
                                                       ++a+++ +++++
  XP_015899326.1 173 pgdppvkkkrkrpanseyvdmndgvsvsaglapvAQAQQTLSQQQQ 218
                     2222222222222222334444444455555543222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-3090189IPR005333Transcription factor, TCP
PROSITE profilePS5136927.14191145IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MAMIQKREVE EDHVTRAVDL SINDRGEQAE KNDLNRESGS SPRAPESAKA LVVAPKEEPE  60
PDMEQRSPSP TAAPIMQVVP VTQQQPKRAS TKDRHTKVEG RGRRIRMPAT CAARIFQLTR  120
ELGHKSDGET IRWLLEHAEP AIIAATGTGT IPAIAMSVNG TLKIPTTAPN PEPGDPPVKK  180
KRKRPANSEY VDMNDGVSVS AGLAPVAQAQ QTLSQQQQQQ QQVVPQGLVP MWAIPSNAVV  240
PAGTFFMVPP MASIAGPSTQ PHIFTFPANG APFINISARP ISSFVSSMAN LATPVHFSSS  300
SASKPAKAQS VLAPSNSGSA STTSSSTTTT TTTTTQMLRD FSLEIYDKKE LPFMSSRKCF  360
DTEAEDEHKM VLADWAYDCY VERKLDQLMK DDKEAMEYLE RVEKYVKIAI WCIQENPAQR  420
PPMDRVIQMI EGSIEVPIPP DPSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177184VKKKRKRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00635PBMTransfer from PK14653.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015899326.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4155191e-132JX415519.1 Ceanothus megacarpus microsatellite CmegB8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899326.10.0transcription factor TCP9
SwissprotO646472e-90TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A061DVP11e-130A0A061DVP1_THECC; TCP family transcription factor
STRINGevm.model.supercontig_18.1761e-135(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.14e-67TCP family protein