PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015899227.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family M-type_MADS
Protein Properties Length: 322aa    MW: 35425.4 Da    PI: 6.1871
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015899227.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.96.4e-141558245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     i++k  r v+fskRr+g++KKAeE     +  +a+i++s+ g+
  XP_015899227.1 15 LIKDKQSRMVSFSKRRHGLMKKAEEFHSISGSSIALIVLSQAGR 58
                    599*************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.7E-17665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.091666IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.94E-19788IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-11828IPR002100Transcription factor, MADS-box
PfamPF003196.9E-161662IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-112843IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-114364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MRPMGKGKRK VAMELIKDKQ SRMVSFSKRR HGLMKKAEEF HSISGSSIAL IVLSQAGRPF  60
VYGAPCFDSV IHRFLQHQIN FNNHNHNNTN NNNNELLLLT HSHPDPSLSL PHETLLMGLG  120
RQGQGQGQGS NQEHHNAAVY GTHAQSCTTT TIPPDPTAPD NNNVVAHVAD QIQEPPWPAA  180
FLPDPTSEFL IAQGSTFTTD SDDQEENAHF DLIDVAPWLA ASPDHSFYAP LPPHDQVVDH  240
SFDVPPPPPP PPPQILIGQG STTDYSHQEY DDYLLDTAPW LAAAMPDHPF HAPPEVVSFR  300
VSNTTTPEKP RGGHGTMPPH LL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015899227.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899227.10.0uncharacterized protein LOC107432568
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1648159
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.16e-19AGAMOUS-like 29