PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015899221.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | HB-other | ||||||||
Protein Properties | Length: 505aa MW: 52904.3 Da PI: 7.5345 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 21.3 | 4.6e-07 | 13 | 74 | 6 | 55 |
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 +ft+ ++ e+e++ ++ n p +e LA+k ++ +qV +WFqNrR+ XP_015899221.1 13 RFTPAEVSEMETVLQEhnNTMPAREVLVGLADKFsgsadrkgkiTVQMKQVWNWFQNRRYAI 74 6999999******9966689999*******************99999************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.41E-10 | 4 | 76 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 0.0085 | 7 | 81 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-7 | 12 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.766 | 13 | 77 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.1E-4 | 13 | 74 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.71E-4 | 13 | 75 | No hit | No description |
Pfam | PF16719 | 5.0E-41 | 127 | 253 | IPR032001 | SAWADEE domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence Send to blast |
MGRPPSNGGP AFRFTPAEVS EMETVLQEHN NTMPAREVLV GLADKFSGSA DRKGKITVQM 60 KQVWNWFQNR RYAIRAKTSK NPGKLNVSPM PRDDSTPVRA VPQPISAPLP APSVPGTGRG 120 TPENSVMEFE AKSGRDGAWY DVSNFLSHRY LESGDPEVLV RFSGFGPEED EWVNIRKHVR 180 QRSLPCESSE CVAVLPGDLI LCFQEGKEQA LYFDAHVLDA QRRRHDVRGC RCRFLVRYDH 240 DQSEEIVPLR KVCRRPETDY RLQQLHAVNE AASAEQQKSN MDPFTVSGLR ADITPAETMQ 300 KQQIVEAAPA VPVLHPNSSL TTQAPVLEPK KAETSIAVSM GNSNVPPVGK TITNSTVTST 360 VPGGSVTSTV PGGSVTSTVP GGSVTSTGPG GTVTSAIPGG TVTSTVPGGT VTSTTPGGTV 420 TIPGGTVVST IPVGTVMSSI PSGTVTSTIS GGTVTSTVPG GTGTSNIPGG TVTSTVLSGS 480 VASTVPGSSG VTVPGSSGET MSEGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iuq_A | 3e-49 | 127 | 257 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 3e-49 | 127 | 257 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 3e-49 | 127 | 257 | 4 | 134 | SHH1 SAWADEE |
4iur_B | 3e-49 | 127 | 257 | 4 | 134 | SHH1 SAWADEE |
4iut_A | 3e-49 | 127 | 257 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 3e-49 | 127 | 257 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 3e-49 | 127 | 257 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 3e-49 | 127 | 257 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 3e-49 | 127 | 257 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 3e-49 | 127 | 257 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015899221.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015899221.1 | 0.0 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 | ||||
Swissprot | Q8RWJ7 | 1e-150 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | A0A2P5F4T9 | 0.0 | A0A2P5F4T9_TREOI; Octamer-binding transcription factor | ||||
STRING | EMJ12659 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.3 | 1e-136 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |