PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015899220.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HB-other
Protein Properties Length: 505aa    MW: 52834.2 Da    PI: 7.8647
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015899220.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.34.6e-071374655
                    S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
        Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                    +ft+ ++ e+e++ ++  n  p +e    LA+k            ++ +qV +WFqNrR+  
  XP_015899220.1 13 RFTPAEVSEMETVLQEhnNTMPAREVLVGLADKFsgsadrkgkiTVQMKQVWNWFQNRRYAI 74
                    6999999******9966689999*******************99999************865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.41E-10476IPR009057Homeodomain-like
SMARTSM003890.0085781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-71280IPR009057Homeodomain-like
PROSITE profilePS500719.7661377IPR001356Homeobox domain
PfamPF000461.1E-41374IPR001356Homeobox domain
CDDcd000862.71E-41375No hitNo description
PfamPF167195.0E-41127253IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFTPAEVS EMETVLQEHN NTMPAREVLV GLADKFSGSA DRKGKITVQM  60
KQVWNWFQNR RYAIRAKTSK NPGKLNVSPM PRDDSTPVRA VPQPISAPLP APSVPGTGRG  120
TPENSVMEFE AKSGRDGAWY DVSNFLSHRY LESGDPEVLV RFSGFGPEED EWVNIRKHVR  180
QRSLPCESSE CVAVLPGDLI LCFQEGKEQA LYFDAHVLDA QRRRHDVRGC RCRFLVRYDH  240
DQSEEIVPLR KVCRRPETDY RLQQLHAVNE AASAEQQKSN MDPFTVSGLR AASTPAETMQ  300
KQQIVEAAPA VPVLHPNSSL TTQAPVLEPK KAETSIAVSM GNSNVPPVGK TITNSTVTST  360
VPGGSVTSTV PGGSVTSTVP GGSVTSTGPG GTVTSAIPGG TVTSTVPGGT VTSTTPGGTV  420
TIPGGTVVST IPVGTVMSSI PSGTVTSTIS GGTVTSTVPG GTGTSNIPGG TVTSTVLSGS  480
VASTVPGSSG VTVPGSSGET MSEGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A3e-491272574134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B3e-491272574134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A3e-491272574134SHH1 SAWADEE
4iur_B3e-491272574134SHH1 SAWADEE
4iut_A3e-491272574134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B3e-491272574134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A3e-491272574134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B3e-491272574134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A3e-491272574134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B3e-491272574134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015899220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899220.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
SwissprotQ8RWJ71e-151SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A2P5F4T90.0A0A2P5F4T9_TREOI; Octamer-binding transcription factor
STRINGXP_008226439.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-136sequence-specific DNA binding transcription factors;sequence-specific DNA binding