PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015899050.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bHLH

Protein Properties

Length: 403aa MW: 44024.4 Da PI: 7.6816

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015899050.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.8	7.9e-13	331	376	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +AveYIk+Lq XP_015899050.1 331 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 376 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.148	325	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.33E-16	328	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.74E-12	329	378	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.7E-14	330	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.4E-10	331	376	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-11	331	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048573	Biological Process	photoperiodism, flowering
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MDSNTHQSFH HQQQQDHQSN SGLLRFRSAP SSLLINFTEE GGGDCGGGVN KNGSCEGSES 60 ERLFTRFVNY SGNNDSDSTP SFQDFDDKST VTATEAAVVS NRMNSQQQGY NTGLPPHYPR 120 HGSNTSASAM DNSSFGLVGS MAMDHQAQSK TVHSNLARQN STPAGLFSHI SVPNGNYGGL 180 NGSNGEVSPP TNRLKSHLSF SSRFPTSLGM LSQISEIGSE NLGAGGLEEG KLGSSNGDGR 240 FYGTGFPLGS WSDSSNFTES LGGLRRDQDN DRKLFSSTQN EEFGNRIHLL SHHLSLPKTS 300 ADVAMEKLLH FQDSVPCKIR AKRGCATHPR SIAERVRRTR ISERMRKLQE LVPNMDKQTN 360 TADMLDLAVE YIKDLQKQFK TLSDNRANCK CLNIQKPVSN QVV

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MDSNTHQSFH HQQQQDHQSN SGLLRFRSAP SSLLINFTEE GGGDCGGGVN KNGSCEGSES  60
ERLFTRFVNY SGNNDSDSTP SFQDFDDKST VTATEAAVVS NRMNSQQQGY NTGLPPHYPR  120
HGSNTSASAM DNSSFGLVGS MAMDHQAQSK TVHSNLARQN STPAGLFSHI SVPNGNYGGL  180
NGSNGEVSPP TNRLKSHLSF SSRFPTSLGM LSQISEIGSE NLGAGGLEEG KLGSSNGDGR  240
FYGTGFPLGS WSDSSNFTES LGGLRRDQDN DRKLFSSTQN EEFGNRIHLL SHHLSLPKTS  300
ADVAMEKLLH FQDSVPCKIR AKRGCATHPR SIAERVRRTR ISERMRKLQE LVPNMDKQTN  360
TADMLDLAVE YIKDLQKQFK TLSDNRANCK CLNIQKPVSN QVV

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00308	DAP	Transfer from AT2G42280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015899050.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015899050.1	0.0	transcription factor bHLH130 isoform X2
Swissprot	Q66GR3	1e-102	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A2P5F1I4	0.0	A0A2P5F1I4_TREOI; Basic helix-loop-helix transcription factor
STRING	XP_010111430.1	1e-166	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	4e-99	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]