PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015899023.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 368aa    MW: 40650.2 Da    PI: 5.4442
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015899023.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-08212259455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  XP_015899023.1 212 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 259
                     8*************************9....888999999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-15206277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.83E-9206263No hitNo description
Gene3DG3DSA:4.10.280.101.1E-14208276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.519208258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-6212259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-8214264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
METGAGALPG STPAAVAATE HEEPGLDSLQ FREEIQRLIT VPPENASSFT ALLELPATQA  60
MELLDHTLDS EGTPTPTTLS GEQVQKPYLH PPFNSSNLTF PSNPALIERA AMFSVFAGEN  120
SPETSSVPSN SSANLEKVKN EPVETDSNPN SFQHLSSDPT VENKNQRPSA KRKEREKKAK  180
GSTKKSKNEN SEDAEKLPYV HVRARRGQAT DSHSLAERAR REKINARMKL LQELVPGCNK  240
ISGTALVLDE IINHVQSLQR QVEFLSMRLA AVNPRIDFNL DSVLSTENGT LVESNFPSVV  300
APLMWPEGPV NGNRQHYQQQ WHFDALRQPL WGREEDNHTF ITPENSLLSY DSSANSASLH  360
SSQLKMEL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015899023.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899023.10.0transcription factor bHLH48
SwissprotQ8VZ021e-105BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A2P5F1I90.0A0A2P5F1I9_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010111436.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49852945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.28e-98bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]