PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015899017.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family AP2
Protein Properties Length: 379aa    MW: 42584.9 Da    PI: 10.2339
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015899017.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.24.8e-093994155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
                    s+y+GV   k +  +vA+   +++ng      ++++lg+f  +e Aa+a++   +k++g
  XP_015899017.1 39 SKYRGVQKLKGKETYVAH---VYDNGytpTEgRTIYLGRFEKEENAARAHDMVSLKFWG 94
                    89****98887777****...66678776447*******************98887766 PP
2AP2323.1e-10137185155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV ++ ++g+W A+            k   lg+f t+eeAa a + a  +l+g
  XP_015899017.1 137 SKYRGVVRHANTGKWQAR---K-----GpgKDSFLGTFETEEEAAIAFDIASIELKG 185
                     89****************...5.....34499999***************9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-1239104IPR016177DNA-binding domain
PfamPF008473.2E-53994IPR001471AP2/ERF domain
CDDcd000184.70E-1639104No hitNo description
Gene3DG3DSA:3.30.730.103.9E-1340103IPR001471AP2/ERF domain
SMARTSM003802.8E-1140108IPR001471AP2/ERF domain
PROSITE profilePS5103214.65840102IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-14137194IPR016177DNA-binding domain
CDDcd000187.14E-17137195No hitNo description
PfamPF008473.0E-4137183IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-13138193IPR001471AP2/ERF domain
SMARTSM003801.4E-18138199IPR001471AP2/ERF domain
PROSITE profilePS5103214.987138193IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MSFKNSSRWQ LPPPIHHPAS DESTAHFGNF KGAFRIKSSK YRGVQKLKGK ETYVAHVYDN  60
GYTPTEGRTI YLGRFEKEEN AARAHDMVSL KFWGTSAQTN FPISDYGMVL KTMEKMTDLD  120
VVAAIRRCSN SFSRGKSKYR GVVRHANTGK WQARKGPGKD SFLGTFETEE EAAIAFDIAS  180
IELKGFKAIT NFDINSYNVS AIVNGQTEPP KEAEKLEVIG VSNNQEKQES SRFLSMGIGN  240
RKKKRQMNYH HFLGKHKGMG YSRKMNMSNE KRVSISSGSQ VVNHKVGVYS HLQGMTSSME  300
SSCGFEHSNS SAFQSYKQTS RSESSIMQEA KNPSSIFQLL SSKVGIPPHN VNSPHEEQES  360
RAIRFQHASS SCFKPFREQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015899017.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899017.10.0AP2-like ethylene-responsive transcription factor BBM1
TrEMBLA0A2P5F1J81e-131A0A2P5F1J8_TREOI; AP2/ERF transcription factor
STRINGXP_010111443.11e-117(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3888122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.15e-43AP2 family protein