PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015898969.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NF-YA
Protein Properties Length: 348aa    MW: 38589 Da    PI: 9.7959
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015898969.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.39.5e-32173229158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq+Rak+e ekk  +++rkpylheSRh hA+rR+Rg+gGrF
  XP_015898969.1 173 EEPVYVNAKQYHGILRRRQSRAKAELEKKF-IRARKPYLHESRHLHAMRRARGCGGRF 229
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.3E-36171232IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.94172232IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.2E-27174229IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.7E-24175197IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860177197IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.7E-24206229IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MQQKPKSGSK AAATESDGNS NNPYMNSSAV NSCQPWWGSS ASHVLGETGI SLSLSKPSIP  60
DLGTAIQTSS QSQAIKFGQP NDKQLLLKQR DGNCRDEQHL QRASPINMPP TMNHEYLAPP  120
TQLELHSHSI GRASYPYSDP YYGGILPSYG PHALSQNLGI HSARMALPLD MAEEPVYVNA  180
KQYHGILRRR QSRAKAELEK KFIRARKPYL HESRHLHAMR RARGCGGRFL NTRKVDSNAA  240
NATPRKGMAN SVSLCAENVS STFSGNADSS NSENCEITEH HKQQQMHPYK AYSNNNGNSF  300
YLHHHGFQLP PYHFSSDHDH RLIGDGELSG KQRERPLVSG TNRALTIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-20173237266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015898969.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898969.10.0nuclear transcription factor Y subunit A-1-like isoform X1
TrEMBLA0A2P5BKE74e-98A0A2P5BKE7_PARAD; Nuclear transcription factor Y subunit A
STRINGXP_010105454.12e-94(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.41e-45nuclear factor Y, subunit A1