PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015898945.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

G2-like

Protein Properties

Length: 447aa MW: 50187.9 Da PI: 7.7869

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015898945.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.1	7.2e-32	257	311	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+ XP_015898945.1 257 KTRIRWTQDLHEKFVECVNRLGGAEKATPKAILKLMESEGLTIFHVKSHLQKYRI 311 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.836	254	314	IPR017930	Myb domain
SuperFamily	SSF46689	9.14E-17	255	311	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.2E-28	255	312	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-23	257	312	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-8	261	310	IPR001005	SANT/Myb domain
Pfam	PF14379	6.0E-20	357	403	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MNDNRIDCQE RNQPNHGLIS DCNFEYTTCS SHHFGVQQQP WNMGVWVQQP TMDQGGSQIQ 60 HLGHGKPSTT IMSRFESPTS AFYATERCMG LPQYECQVVG YPALGSHTSR TCEGQFPSGQ 120 SSGDNCYSDS ADQADPKFEF RNSLQPSVKP QLCSFQSNRS FEKSNHISCS NMQEGKLFGH 180 QQHKLHEDNA LSVRRNFSVP FIENQDHAVY SNSFSSPLAH LSFSSPHQQK QSPRFSSGNG 240 CVTTANSSSS AAVLSNKTRI RWTQDLHEKF VECVNRLGGA EKATPKAILK LMESEGLTIF 300 HVKSHLQKYR IAKYLPGPSE GKSEKRTSIN ISPQLDVKTA ATLSQHYGVN FYGSGLQIRE 360 ALQLQLDVQR RLHEQLEIQR NLQFRIEEQG KQLKMMFDLQ QKTSNSLFKA ETMDKTSPHG 420 SPSNSLDEVQ VFIAEESGNT HFPSKIS

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MNDNRIDCQE RNQPNHGLIS DCNFEYTTCS SHHFGVQQQP WNMGVWVQQP TMDQGGSQIQ  60
HLGHGKPSTT IMSRFESPTS AFYATERCMG LPQYECQVVG YPALGSHTSR TCEGQFPSGQ  120
SSGDNCYSDS ADQADPKFEF RNSLQPSVKP QLCSFQSNRS FEKSNHISCS NMQEGKLFGH  180
QQHKLHEDNA LSVRRNFSVP FIENQDHAVY SNSFSSPLAH LSFSSPHQQK QSPRFSSGNG  240
CVTTANSSSS AAVLSNKTRI RWTQDLHEKF VECVNRLGGA EKATPKAILK LMESEGLTIF  300
HVKSHLQKYR IAKYLPGPSE GKSEKRTSIN ISPQLDVKTA ATLSQHYGVN FYGSGLQIRE  360
ALQLQLDVQR RLHEQLEIQR NLQFRIEEQG KQLKMMFDLQ QKTSNSLFKA ETMDKTSPHG  420
SPSNSLDEVQ VFIAEESGNT HFPSKIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015898945.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015898945.1	0.0	myb family transcription factor PHL5 isoform X1
TrEMBL	A0A251N848	1e-172	A0A251N848_PRUPE; Uncharacterized protein
STRING	XP_009376116.1	1e-158	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3740	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	2e-69	G2-like family protein