PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015898942.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family SBP
Protein Properties Length: 381aa    MW: 40762.5 Da    PI: 9.0048
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015898942.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP137.15.3e-4376151176
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                     +CqvegC++dls+ak y+ rhkvC +hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  XP_015898942.1  76 RCQVEGCKVDLSDAKAYYCRHKVCGMHSKTPKVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 151
                     6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.6E-3570138IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.35174151IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.11E-4175155IPR004333Transcription factor, SBP-box
PfamPF031101.3E-3277150IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEMGCSSMTE SGGSSSSSPP NSSTESLNGL KFGQKIYFED VGPGTPSKSG AGSSSSGPGP  60
SKKVKAGIVQ TGQPPRCQVE GCKVDLSDAK AYYCRHKVCG MHSKTPKVIV AGLEQRFCQQ  120
CSRFHQLPEF DQGKRSCRRR LAGHNERRRK PPPGSLLSTR YGRLSTPIFE NSNRVGVGGG  180
SFLMDFSAYP RLAGRDAWTL ARTSERVPGN QSTNTAVKLL PNLWQSNSES PPSDLFLQGS  240
AGGSSFSGQG ISPGECISGV TDSSCALSLL SNQPWASRDR PSGLVVHSSV NAEGVPVVQP  300
TAPHGGTVNH FLTTSWGFKD NVTSSSSQEI LPNLGLGQML QPLTIQFSGE VELSQQNRRQ  360
FMELGHSRDY DSAGQNMPWS L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-30771501184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015898942.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898941.10.0squamosa promoter-binding-like protein 9 isoform X1
TrEMBLW9RJ151e-178W9RJ15_9ROSA; Squamosa promoter-binding-like protein 15
STRINGXP_010102560.11e-179(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.15e-67squamosa promoter binding protein-like 9