PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015898930.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 294aa    MW: 31100.4 Da    PI: 9.5589
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015898930.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-07101126227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+ C+ +     Ck+Gd+C+FaHg+
  XP_015898930.1 101 KTRMCNKYNSAEGCKFGDKCHFAHGE 126
                     899*******99************96 PP
2zf-CCCH38.12.6e-12261285126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC++f++ G C +GdrC+FaHg
  XP_015898930.1 261 FKTKLCDNFSK-GSCTFGDRCHFAHG 285
                     69*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.0423462IPR000571Zinc finger, CCCH-type
SMARTSM003564.83461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-53560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-73659IPR000571Zinc finger, CCCH-type
PfamPF146081.64259No hitNo description
PROSITE profilePS5010313.33899127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-1499130IPR000571Zinc finger, CCCH-type
SMARTSM003560.03499126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-899130IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4101126IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.58E-13158238IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.108.4E-14166236IPR004088K Homology domain, type 1
SMARTSM003223.6E-12167237IPR004087K Homology domain
PROSITE profilePS5008414.236168232IPR004088K Homology domain, type 1
PfamPF000138.7E-11170234IPR004088K Homology domain, type 1
CDDcd001051.54E-13170232No hitNo description
Gene3DG3DSA:4.10.1000.103.6E-16256291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-8260290IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-7260286IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.521260287IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-10261285IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDIRKRARSE AGFNTNGGVK KSKQEMESLS TGVGSKSKPC TKFFSTAGCP FGEGCHFLHY  60
VPGGYNAVAQ MMNLAPAVPP APRNMAPPPP LANGSSSAAV KTRMCNKYNS AEGCKFGDKC  120
HFAHGEWELG KPIAPSHDDP RAMPSIPNRF AGRMEPPPPG PASSFGAKAT AKISVDASLA  180
GAIIGRAGVN AKQISRQTGA RLFIRDIESD PSLKNIELEG TFEQIEEAGA MVRELIVTVS  240
MNASSKTTGM PGPPAPPGNN FKTKLCDNFS KGSCTFGDRC HFAHGTAELR KSTL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015898930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898930.10.0zinc finger CCCH domain-containing protein 14 isoform X1
SwissprotQ7F8R01e-108C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2I4DFQ71e-167A0A2I4DFQ7_JUGRE; zinc finger CCCH domain-containing protein 14-like
STRINGVIT_08s0007g06400.t011e-164(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.17e-55C3H family protein