PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015898915.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C2H2 | ||||||||
Protein Properties | Length: 207aa MW: 22602.4 Da PI: 7.8917 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.3 | 1.3e-05 | 42 | 64 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+ksF+++ L H++ H XP_015898915.1 42 YVCSSCSKSFPSSQALGGHQNAH 64 9*******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.01E-6 | 39 | 68 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.1E-5 | 41 | 65 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 6.9E-9 | 42 | 66 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.926 | 42 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 44 | 64 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MLGKAADRSS SMPYPGGRSA ASSSTSSPSL LSAWLSISSG PYVCSSCSKS FPSSQALGGH 60 QNAHRRQREE IRVRYLRERL ERVRATTNNG IFPPSFPPPK VLPLGPESDC KIQALTVSIG 120 GEDRTERRVE LDFWHGHGSE DVDGYGEVYE LPPRENRHKC VPCLNLIRNL KESMPSLELT 180 LAIGNGYGSG MEGSESVGDK LDLTLRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015898915.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015898915.1 | 1e-150 | transcriptional regulator TAC1-like |