PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015898777.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

NF-YC

Protein Properties

Length: 295aa MW: 32828.3 Da PI: 4.5337

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015898777.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	57.5	3e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +P l+ska elf+ +l r++ + + +t++ ++++v+ +fdfl iv + XP_015898777.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKRGAKTMNSLHLKQCVQTFSVFDFLRHIVKK 86 5789************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.5E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	8.2E-19	4	88	IPR009072	Histone-fold
Pfam	PF00808	8.2E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YEITLKRGAK 60 TMNSLHLKQC VQTFSVFDFL RHIVKKVPDL GGSDTAGEDR STVKRRKVVD DEDNDSEEDS 120 KRTKMIEAGQ ITGSGRGRGR GRGRGRGRSS RLIERETALH DEKFEDDVDI PKDGDKNDQS 180 LESPDDATEH EGLKKENMSV DKDSEPSVRN FDLNVDLNEN GDSTNLSAAA PASLATEVST 240 AVPASSATQT TPEMKHEEYP GWSLADVENM AIDPIQLANL NRNIDEDEED YDEES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-20	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	146	RGRGRGRGRG
2	137	147	RGRGRGRGRGR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015898777.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015898777.1	0.0	dr1-associated corepressor homolog
TrEMBL	A0A2R6PFD0	1e-109	A0A2R6PFD0_ACTCH; Dr1-associated corepressor like
STRING	XP_010031686.1	1e-109	(Eucalyptus grandis)
STRING	XP_010106320.1	1e-108	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	2e-61	NF-YC family protein