PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015898416.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 343aa    MW: 38266.4 Da    PI: 8.0955
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015898416.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
   XP_015898416.1 14 KGPWSPEEDAKLKEYIEKYGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding40.56.5e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T eEd ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
   XP_015898416.1  69 GEFTDEEDRIICTLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.518962IPR017930Myb domain
SuperFamilySSF466895.59E-2811109IPR009057Homeodomain-like
SMARTSM007175.5E-131364IPR001005SANT/Myb domain
PfamPF002498.3E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-251569IPR009057Homeodomain-like
CDDcd001671.43E-91662No hitNo description
PROSITE profilePS5129422.42863117IPR017930Myb domain
SMARTSM007177.9E-1367115IPR001005SANT/Myb domain
PfamPF002491.4E-1169111IPR001005SANT/Myb domain
CDDcd001676.92E-970113No hitNo description
Gene3DG3DSA:1.10.10.608.1E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009785Biological Processblue light signaling pathway
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEYIE KYGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FTDEEDRIIC TLFATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMAM  120
APPISHQRLK PQYPSLLQSS SSSSSPSDQS YRGSSNYRSS FEPISSFSPS LMSSSCSSAA  180
TDQYRHHHHL QIIPQESFIS TTTAQMQHYQ VKDHNYNLLM FSSTTGDHQQ QASCSSSDGS  240
CNNNSNNYFC SSGVEENQNM IQISHGGDYF VNGLTSSSTS QKQNGNINGL VWGGGAGGNN  300
NQAMTTSLEY GLEEIKQLIS TSSCSNFLFD ENKTDQERVV MYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-28141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015898416.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898416.10.0transcription factor RAX2
RefseqXP_024935306.10.0transcription factor RAX2
RefseqXP_024935307.10.0transcription factor RAX2
TrEMBLA0A498IGY41e-107A0A498IGY4_MALDO; Uncharacterized protein
STRINGXP_004304464.11e-108(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.14e-79MYB family protein