PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015898289.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 931aa    MW: 103720 Da    PI: 5.3721
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015898289.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.6e-175297248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g+WT+eEde+l  av+ + g++Wk+Ia+ +   Rt+ qc +rwqk+l
   XP_015898289.1 52 GKWTAEEDERLRIAVHHFKGKNWKKIAEFFK-DRTDVQCLHRWQKVL 97
                     89****************************9.************986 PP
2Myb_DNA-binding55.41.4e-17103149148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde +v +v+++G + W+ Ia+ ++ gR +kqc++rw+++l
   XP_015898289.1 103 KGPWSKEEDEVIVALVNKYGAKKWSIIAEALP-GRIGKQCRERWHNHL 149
                      79******************************.*************97 PP
3Myb_DNA-binding48.61.8e-15155197145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l++a++ +G++ W+   + ++ gRt++ +k++w+
   XP_015898289.1 155 KEPWTQEEELTLIRAHQTYGNK-WAELTKFLP-GRTDNAIKNHWN 197
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.5994697IPR017930Myb domain
SMARTSM007175.9E-135099IPR001005SANT/Myb domain
PfamPF002496.3E-155197IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2152109IPR009057Homeodomain-like
SuperFamilySSF466891.22E-1552107IPR009057Homeodomain-like
CDDcd001671.63E-125397No hitNo description
PROSITE profilePS5129431.15898153IPR017930Myb domain
SuperFamilySSF466898.99E-32100196IPR009057Homeodomain-like
SMARTSM007172.7E-17102151IPR001005SANT/Myb domain
CDDcd001677.05E-15105149No hitNo description
PfamPF139211.0E-16106164No hitNo description
Gene3DG3DSA:1.10.10.601.3E-26110156IPR009057Homeodomain-like
PROSITE profilePS5129419.049154204IPR017930Myb domain
SMARTSM007175.5E-15154202IPR001005SANT/Myb domain
CDDcd001671.63E-11157197No hitNo description
Gene3DG3DSA:1.10.10.603.7E-22157204IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 931 aa     Download sequence    Send to blast
MVGTKLMTRL RRSNIKRPGV VAAAPNTETN ACQKMRPFHG RISGPTRRST TGKWTAEEDE  60
RLRIAVHHFK GKNWKKIAEF FKDRTDVQCL HRWQKVLNPE LIKGPWSKEE DEVIVALVNK  120
YGAKKWSIIA EALPGRIGKQ CRERWHNHLN PAINKEPWTQ EEELTLIRAH QTYGNKWAEL  180
TKFLPGRTDN AIKNHWNSSV KKKVDTYLAS GLLAQFQGLP EVRNQNSSSM GMRQGHADEL  240
IEENIIECSQ RSNAVNCTKF DHVTENTAIN ATEDFRTEES DSGVGCNLEQ HSAYEDVSPA  300
IDDTQFSSHE LSGLRFLDSL EESSVQFGTS GFFPTENENY DSGSSLLQTS EGYRTSTTTE  360
DMLVDSVKME HLMISESNCC KIIFSEAMKP EGNAAKKPIY MPLNGGKSSL PGQSDIHSSS  420
SARTLPLKSP VRPKNVSGHT LELEVIPNLK DDFIYVDSPN GDSDKTGHHL KNGPKLVPVD  480
IFSSSNPDSR ATILSGCSDK RDSELNEANV PLNLAVADNT DSMQTLTLTD DSSTMQNKEK  540
DLGTLSYEPL RFPLLDIPFL NCDLMKTGSE MQQTYSPLGI RQFMLSSTNF SSPCSLLDSP  600
IVDGTPEAIL KHAAKRFSST ASIMKKQSDE ILSPAEKTKG EMKFENDTNK LSYGDSMQDV  660
VNMDCSFEGG KETVENLDGR ISDKDDEAKH TGVLTEHNIG KDAHETNSTL INAVLSPRSQ  720
HRKLERSDLG GSLDSVSEND ERQTVPVTSL ECAESSNPSK STLETAENDA DNQSINMFGE  780
TPGIKRDIKS PSTWKSPVFV NTFLHGNVDT IMTFEDIEYF LSPGTRSYDA IGLMKQMTEQ  840
TAATITNARE VFAGDFVESA PKTIFSLDQN STDKNNYIHH NEQENMPPNL LKEWRVLDFS  900
ECVTPTKEME SKRLAVAPTI SSPSYLMKSC R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-67522048159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-67522048159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015898289.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2296021e-161KP229602.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB46) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898289.10.0transcription factor MYB3R-1-like isoform X2
TrEMBLA0A2P5FT150.0A0A2P5FT15_TREOI; Octamer-binding transcription factor
STRINGXP_010089227.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.21e-160Homeodomain-like protein