PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015898225.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 337aa    MW: 37219.7 Da    PI: 6.3727
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015898225.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-183987355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a++ ++g
  XP_015898225.1 39 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARTMRG 87
                    67******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.3E-3538101IPR001471AP2/ERF domain
PROSITE profilePS5103220.6663895IPR001471AP2/ERF domain
CDDcd000181.11E-293894No hitNo description
PRINTSPR003674.8E-83950IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-293995IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-213996IPR016177DNA-binding domain
PfamPF008471.0E-114187IPR001471AP2/ERF domain
PRINTSPR003674.8E-86177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEFNTSKPDS SSPSSSSSKS KKKQQQQQQQ QQQDTTVRFL GVRRRPWGRY AAEIRDPSTK  60
ERHWLGTFDT AEEAALAYDR AARTMRGSKA RTNFVYSDMP HGSSVTSIIS PDEAAREMSH  120
LFSAPPPPQL PPQVPSQLPH SHSHSHSHSS SQLMFSQDPF DAFLFGGGGG RWPVHDQDEG  180
SVAAGSAHQF HLPITTINGS HSHSHSQQMQ MLMADETELP PLPPCVSTAC YAGSESDHHG  240
LIMDDSHINM NMNMNMNLGR QVWNNDTTST TTSLYGFPHT TTTTTTATTN GLVESQLSRP  300
YLGFDSKDNV HQSPLFSDTG FDAYEFDLGS SSSAYFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-203994359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00163DAPTransfer from AT1G28160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015898225.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889938.10.0uncharacterized protein LOC107424606
RefseqXP_015898225.10.0uncharacterized protein LOC107431750
TrEMBLA0A2I4FBX81e-73A0A2I4FBX8_JUGRE; ethylene-responsive transcription factor LEP-like
STRINGXP_008390226.14e-76(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.12e-33ERF family protein