PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015898205.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family AP2
Protein Properties Length: 425aa    MW: 46632.1 Da    PI: 9.0902
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015898205.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-1769128155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  XP_015898205.1  69 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 128
                     57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.4E-1369128IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-1769137IPR016177DNA-binding domain
PROSITE profilePS5103220.12670136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-1570137IPR001471AP2/ERF domain
SMARTSM003801.9E-2570142IPR001471AP2/ERF domain
PRINTSPR003674.2E-57182IPR001471AP2/ERF domain
PRINTSPR003674.2E-5118138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MASSSSDAGL KSESGGGGGS AGGEASEAVM ANDQLLLYRG LKKAKKERGC TAKERISKMP  60
PCAAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK GKQVYLGAYD DEEAAARAYD  120
LAALKYWGPG TLINFPVTDY TRDLEEMQNV SREDYLASLR RKSSGFSRGI SKYRGLSSRW  180
ESSFGRMAGS EYLNSINYGD DSATESEFIG GYCIERKIDL TAYIKWWGPN KTRQADAGVK  240
LSEETKHCCS GDVGGELKSL EWAVQPTEPY QMPRLGMSHE GKKHAGSKVS ALSILSRSAA  300
YKNLQEKASK KEENNADNDE NKNKNIINKT DYGKAVEKST SHDGGNEKLG VSIGMGGGLS  360
LQRNVFSLSP FLSSPLLTNY NTMDPLVDPL LWTSLAPVLP SGINRTPEVT KTENSSSFTL  420
FQPGE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015898205.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898205.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-166AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A2P5EN460.0A0A2P5EN46_TREOI; AP2/ERF transcription factor
STRINGGorai.003G091500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60072936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-146AP2 family protein