PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015898072.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MIKC_MADS
Protein Properties Length: 280aa    MW: 32106 Da    PI: 7.6152
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015898072.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.85.8e-283787151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien   rqvtfskRr g++KKA+ELSvLCdaevaviifsstgklye++s
  XP_015898072.1 37 KKIENLNSRQVTFSKRRGGLIKKANELSVLCDAEVAVIIFSSTGKLYEFAS 87
                    68***********************************************86 PP
2K-box59.61.3e-201282052299
           K-box  22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + L++e+ +L+   R+++G++L+ L++ eLqqLe+qL +++ +++++K+++lleq+++++ +e+++  en++Lrk+le
  XP_015898072.1 128 NALEDEVAKLRLACRQMMGKELDLLTFSELQQLEDQLSEGILSVKNRKEQVLLEQVRRSRLQEQKTVLENENLRKELE 205
                     57999******999*************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-412988IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.5762989IPR002100Transcription factor, MADS-box
CDDcd002653.18E-413097No hitNo description
SuperFamilySSF554555.49E-3330113IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-293151IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003185IPR002100Transcription factor, MADS-box
PfamPF003194.9E-263885IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-295166IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-296687IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.371120210IPR002487Transcription factor, K-box
PfamPF014861.6E-14128204IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009910Biological Processnegative regulation of flower development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MLPHCLEEEK KSEQEEEQRH QQQPKQKNMG RGKIEIKKIE NLNSRQVTFS KRRGGLIKKA  60
NELSVLCDAE VAVIIFSSTG KLYEFASNSM EHTLSRYTRG MQVDGTLEHP ERRPDHRDTR  120
PQQHGNGNAL EDEVAKLRLA CRQMMGKELD LLTFSELQQL EDQLSEGILS VKNRKEQVLL  180
EQVRRSRLQE QKTVLENENL RKELENMRQN YISPTLNSFA SGRRFLQADP KPAVSCSSSD  240
ESDHSDTSLH LGLSSEYNRK RKLAKMEPTS NESGSQLASE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-222998170MEF2C
5f28_B6e-222998170MEF2C
5f28_C6e-222998170MEF2C
5f28_D6e-222998170MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015898072.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024922593.11e-178agamous-like MADS-box protein AGL18 isoform X2
SwissprotQ9M2K85e-65AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A498I3962e-97A0A498I396_MALDO; Uncharacterized protein
STRINGXP_008351603.14e-98(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35823260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.13e-57AGAMOUS-like 18