PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015898004.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

G2-like

Protein Properties

Length: 416aa MW: 47051.8 Da PI: 8.8088

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015898004.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.8	4.4e-32	243	296	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ XP_015898004.1 243 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 296 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.15E-15	240	296	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-28	241	296	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-23	243	296	IPR006447	Myb domain, plants
Pfam	PF00249	2.8E-7	244	295	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MELFPAQPDL SLQISPPNTK PTSNSWSRRS SAREEEDVVD LGFWKRALDS RNSISSSMAA 60 KPDNNNNNNN NTCFELSLSN PRLSDQSNSN HNIHQHHHLQ NSNGNLFHSF QQNQYQNHHY 120 QLHNHHHNHN HNHHQLFHHH HQQQQQQQQA GLTQELGFLR PIRGIPVYQN PPHPPPPFPF 180 SAQLPLDTSC LPSSINMNAN NNSTTISTTG SNPLFQSSSA THQGLMRSRF LSRFPAKRSM 240 RAPRMRWTTT LHARFVHAVE LLGGHERATP KSVLELMDVK DLTLAHVKSH LQMYRTVKTT 300 DRAAASSGQS DAYENGSSGD TTEDLMFDIQ KQSDQQGRLK AQDKEYHGLW SNSSREAWLH 360 GKPKDSDGSI NLPSLEKDLD PKCLSYERIS DVSSSTNLSG SSPKKPNLEF TLGRPH

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MELFPAQPDL SLQISPPNTK PTSNSWSRRS SAREEEDVVD LGFWKRALDS RNSISSSMAA  60
KPDNNNNNNN NTCFELSLSN PRLSDQSNSN HNIHQHHHLQ NSNGNLFHSF QQNQYQNHHY  120
QLHNHHHNHN HNHHQLFHHH HQQQQQQQQA GLTQELGFLR PIRGIPVYQN PPHPPPPFPF  180
SAQLPLDTSC LPSSINMNAN NNSTTISTTG SNPLFQSSSA THQGLMRSRF LSRFPAKRSM  240
RAPRMRWTTT LHARFVHAVE LLGGHERATP KSVLELMDVK DLTLAHVKSH LQMYRTVKTT  300
DRAAASSGQS DAYENGSSGD TTEDLMFDIQ KQSDQQGRLK AQDKEYHGLW SNSSREAWLH  360
GKPKDSDGSI NLPSLEKDLD PKCLSYERIS DVSSSTNLSG SSPKKPNLEF TLGRPH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	244	298	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	244	298	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	244	298	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	244	298	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	244	298	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	244	298	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	244	298	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	244	298	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development. {ECO:0000269\|PubMed:11395775, ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:14561401, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928, ECO:0000269\|PubMed:18849474, ECO:0000269\|PubMed:20179097}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015898004.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by AS2 in adaxial tissue. {ECO:0000269\|PubMed:18849474}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015898004.1	0.0	probable transcription factor KAN2 isoform X2
Swissprot	Q93WJ9	3e-56	KAN1_ARATH; Transcription repressor KAN1
TrEMBL	A0A438EQ90	1e-161	A0A438EQ90_VITVI; Putative transcription factor KAN2
STRING	VIT_02s0012g01940.t01	1e-162	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	3e-84	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang T,Kerstetter RA,Irish VF APUM23, a PUF family protein, functions in leaf development and organ polarity in Arabidopsis. J. Exp. Bot., 2014. 65(4): p. 1181-91 [PMID:24449383] Mach J Getting in Shape? Leaves work it out with KANADI1. Plant Cell, 2014. 26(1): p. 4 [PMID:24464293] Jun SE, et al. Comparative analysis of the conserved functions of Arabidopsis DRL1 and yeast KTI12. Mol. Cells, 2015. 38(3): p. 243-50 [PMID:25518926] Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442] Xie Y, et al. Meta-Analysis of Arabidopsis KANADI1 Direct Target Genes Identifies a Basic Growth-Promoting Module Acting Upstream of Hormonal Signaling Pathways. Plant Physiol., 2015. 169(2): p. 1240-53 [PMID:26246448] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Singh A, et al. Phytohormonal crosstalk modulates the expression of miR166/165s, target Class III HD-ZIPs, and KANADI genes during root growth in Arabidopsis thaliana. Sci Rep, 2017. 7(1): p. 3408 [PMID:28611467] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530] Ó'Maoiléidigh DS,Stewart D,Zheng B,Coupland G,Wellmer F Floral homeotic proteins modulate the genetic program for leaf development to suppress trichome formation in flowers. Development, 2018. [PMID:29361563]