PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015897827.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 299aa MW: 32197.3 Da PI: 8.2616 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.5 | 1.3e-32 | 74 | 130 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 + vrYkeClkNhAa++Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+e e XP_015897827.1 74 KVVRYKECLKNHAAAMGGNATDGCGEFMPS-GEEGTIEALNCSACNCHRNFHRKEIEG 130 679**************************9.999********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-25 | 76 | 131 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.9E-29 | 76 | 128 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.9E-31 | 77 | 128 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.278 | 78 | 127 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-31 | 224 | 294 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.54E-19 | 226 | 293 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.5E-27 | 232 | 288 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MELSSQEGEI PIPINSAFGG GGGGGGHGHG HLIHHDPSPH NHIIPSSAPP QIVPSNGSSM 60 PTTSLDDHPT PYKKVVRYKE CLKNHAAAMG GNATDGCGEF MPSGEEGTIE ALNCSACNCH 120 RNFHRKEIEG EPNPCDCHHS SSPHINRIGR KFILGHHKNM LPPEALGYPT ATGTFIPSRA 180 PPPHHMIMSY NMGSLPSESD EQEDGGVGGG GGGGGIGVVG GAVSTRGPHM VKKRFRTKFT 240 QEQKEKMLNF AEKVGWKIQK QEESVVQQFC QEIGVKRRVL KVWMHNNKHN LAKKNPTSA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 9e-25 | 233 | 290 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015897827.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ492960 | 2e-68 | FJ492960.1 Rhamnus alaternus microsatellite RaA117 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015897827.1 | 0.0 | zinc-finger homeodomain protein 4-like | ||||
Swissprot | Q9M9S0 | 5e-77 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A2I4EEG0 | 1e-149 | A0A2I4EEG0_JUGRE; zinc-finger homeodomain protein 4 | ||||
STRING | VIT_12s0035g01880.t01 | 1e-148 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 7e-76 | homeobox protein 21 |