PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015897596.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | GRAS | ||||||||
Protein Properties | Length: 858aa MW: 92898.1 Da PI: 6.3281 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 417.6 | 1.1e-127 | 477 | 836 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 +lLl+cAeavs++++e+a+++L ++ el++p g++ qR+aayf eA++arl++s+ ++y+al+ps+ + ++ ++ ++a+++f+ +sP++kfsh+ XP_015897596.1 477 LTLLLQCAEAVSADNFEEANKMLLEIAELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYAALSPSSVPITHIQKMASAFQVFNGISPFVKFSHF 571 579******************************************************************************************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g s ++le+tg+rL++fA++lg+pfef + va+++ +l++ XP_015897596.1 572 TANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGT----SVDALEATGKRLSDFADKLGLPFEFLP-VADKVGNLDP 661 *****************************************************....9**************************.7********* PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 ++L+v+++Ea+aV++ h+l+d ++s ++ +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a++++eseer++vE XP_015897596.1 662 DRLNVSKREAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVE 749 ****************9..999999999999....**********************.899********************************** PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ll+rei+nv+a g +r + + +++Wre+++++GF+ ++l +aa+qa lll +++s+gy++ e+sg+l lgWkd L+++SaWr XP_015897596.1 750 QQLLSREIRNVLAVGGPSRSGDVK-FHNWREKFQQCGFRGISLAGNAATQATLLLGMFPSEGYTLVEDSGTLKLGWKDLCLLTASAWR 836 ******************888877.**************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 61.975 | 450 | 816 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.8E-125 | 477 | 836 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008356 | Biological Process | asymmetric cell division | ||||
GO:0009630 | Biological Process | gravitropism | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0051457 | Biological Process | maintenance of protein location in nucleus | ||||
GO:0090610 | Biological Process | bundle sheath cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 858 aa Download sequence Send to blast |
MVRKRMASEM EVQVPTAATA TATASPITDY VRFSRRTGTV ATPNTNSSSS TTMSMMGFCF 60 PTATAAAATN ININMSMPNN SNYTNNNNNP TTTRVPTQLI SNYSTMPMLP SSANLTVLTS 120 GAGSGVLSSS PCPAANSTSP SPPPHIIDPS HPLHYHLHQV HQGSQPQPQA PAVCGFSGLP 180 LFPPETTTNS SDLPIAISAS SGGCGTRVAP MEDTCSSSSS SSATAWIDGI IKDLIHSSTD 240 VSIPQLIHNV REIIYPCNPN LAALLEYRLR SISETTFTSP SSDIRKRKEA PAPPLSVQQQ 300 QYQHQHLQQQ VQQGPNGLNK VINLDSTVNN FAIFPPPPDS CCAASASHAA THAIMNNNNN 360 NSNNNNNNNQ DLYLHWGLTV PVLPPPPSSL TPSNEQHHHH HHHHQSLDLV QQQQQPQDPQ 420 QENSSPPEEA EAEAEATATA TVAPPPSPAN ANAAILRESR KEEMRQQKRD EQGLHLLTLL 480 LQCAEAVSAD NFEEANKMLL EIAELSTPFG TSAQRVAAYF SEAMSARLVS SCLGIYAALS 540 PSSVPITHIQ KMASAFQVFN GISPFVKFSH FTANQAIQEA FEREERVHII DLDIMQGLQW 600 PGLFHILASR PGGPPFVRLT GLGTSVDALE ATGKRLSDFA DKLGLPFEFL PVADKVGNLD 660 PDRLNVSKRE AVAVHWLQHS LYDVTGSDTN TLWLLQRLAP KVVTVVEQDL SHAGSFLGRF 720 VEAIHYYSAL FDSLGASYGE ESEERHVVEQ QLLSREIRNV LAVGGPSRSG DVKFHNWREK 780 FQQCGFRGIS LAGNAATQAT LLLGMFPSEG YTLVEDSGTL KLGWKDLCLL TASAWRPPPS 840 PFHTTTAITT PTPTATLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 0.0 | 460 | 837 | 3 | 380 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015897596.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015897583.2 | 0.0 | protein SCARECROW 2 isoform X2 | ||||
Refseq | XP_015897596.1 | 0.0 | protein SCARECROW 2 isoform X1 | ||||
Swissprot | Q2Z2E9 | 0.0 | SCR_IPONI; Protein SCARECROW | ||||
TrEMBL | A0A251NXN6 | 0.0 | A0A251NXN6_PRUPE; Uncharacterized protein | ||||
STRING | XP_008244193.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2068 | 34 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 0.0 | GRAS family protein |