PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015897583.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

GRAS

Protein Properties

Length: 307aa MW: 33824.4 Da PI: 6.176

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015897583.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	344.1	2.3e-105	3	285	79	374
GRAS 79 aalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelg 173 +a+++f+ +sP++kfsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g s ++le+tg+rL++fA++lg XP_015897583.1 3 SAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGT----SVDALEATGKRLSDFADKLG 93 7899*****************************************************************....9*************** PP GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 +pfef + va+++ +l++++L+v+++Ea+aV++ h+l+d ++s ++ +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalf XP_015897583.1 94 LPFEFLP-VADKVGNLDPDRLNVSKREAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALF 180 ***.7*********************9..999999999999....******************.899************ PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363 dsl a++++eseer++vE++ll+rei+nv+a g +r + + +++Wre+++++GF+ ++l +aa+qa lll +++s+gy++ e+sg+l lgWk XP_015897583.1 181 DSLGASYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGDVK-FHNWREKFQQCGFRGISLAGNAATQATLLLGMFPSEGYTLVEDSGTLKLGWK 274 ********************************888877.************************************************ PP GRAS 364 drpLvsvSaWr 374 d L+++SaWr XP_015897583.1 275 DLCLLTASAWR 285 ********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	51.509	1	265	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.1E-103	3	285	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
LASAFQVFNG ISPFVKFSHF TANQAIQEAF EREERVHIID LDIMQGLQWP GLFHILASRP 60 GGPPFVRLTG LGTSVDALEA TGKRLSDFAD KLGLPFEFLP VADKVGNLDP DRLNVSKREA 120 VAVHWLQHSL YDVTGSDTNT LWLLQRLAPK VVTVVEQDLS HAGSFLGRFV EAIHYYSALF 180 DSLGASYGEE SEERHVVEQQ LLSREIRNVL AVGGPSRSGD VKFHNWREKF QQCGFRGISL 240 AGNAATQATL LLGMFPSEGY TLVEDSGTLK LGWKDLCLLT ASAWRPPPSP FHTTTAITTP 300 TPTATLY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	0.0	1	286	94	379	Protein SCARECROW
5b3h_D	0.0	1	286	94	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor involved in asymmetric cell division. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015897583.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015897583.2	0.0	protein SCARECROW 2 isoform X2
Refseq	XP_015897596.1	0.0	protein SCARECROW 2 isoform X1
Swissprot	Q9AVK4	0.0	SCR_PEA; Protein SCARECROW
TrEMBL	C9WBB6	0.0	C9WBB6_LUPAL; Scarecrow 1
STRING	EMJ07630	0.0	(Prunus persica)
STRING	XP_010113028.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2068	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	0.0	GRAS family protein