PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015897521.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | bHLH | ||||||||
Protein Properties | Length: 103aa MW: 11386.8 Da PI: 6.7895 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.3 | 8.6e-06 | 2 | 32 | 19 | 54 |
HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ L++l+ + +K + a++L +A+eYIk L XP_015897521.1 2 RITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 32 677888888887.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.35 | 1 | 32 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.11E-6 | 1 | 36 | No hit | No description |
SuperFamily | SSF47459 | 5.76E-10 | 1 | 46 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-9 | 1 | 40 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
DRITALQQLV SPFGKTDTAS VLSEAIEYIK FLHEQVTVLS TPYMKSGSAI PHQQSSDKSK 60 DPEGPKQDLR SRGLCLVPVS STFPVTHETT VDFWTPTFGG TYR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015897521.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015866794.1 | 3e-68 | transcription factor bHLH123-like | ||||
Swissprot | Q8GXT3 | 1e-50 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | A0A061F6M7 | 2e-62 | A0A061F6M7_THECC; Basic helix-loop-helix DNA-binding superfamily protein | ||||
STRING | EOY12661 | 3e-63 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1118 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 6e-53 | bHLH family protein |
Publications ? help Back to Top | |||
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