PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015897478.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Dof

Protein Properties

Length: 347aa MW: 37080.2 Da PI: 9.0057

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015897478.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123	9.8e-39	62	121	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e++lkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ XP_015897478.1 62 ETSLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 121 6789*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-31	45	110	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-32	64	119	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.544	65	119	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	67	103	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MVFSSIPAYH DPSNWQQFLP PPLPPPQTLP PPSQPHGVGG SGSIRPGSMA DRARMANIPM 60 PETSLKCPRC ESTNTKFCYF NNYSLTQPRH FCKTCRRYWT RGGALRNVPV GGGCRRNKRS 120 KGSSSSKSPV SSDRQTGSST PSGSSTSSLP SNNTLAPPDI IGLTNQVPSL RLMAPLHHHL 180 TDFAEMGFNY GALNYAAMGG GGDFNFQIGS SSTGSLGRLP TDGMMDHQWR LQQASQFPFM 240 ATAGLDPSQP PPPAGLFESG GVDALGYHHH LRTKSTTSGL ASQLASVKME DHQSTEMNLS 300 KQLLGISSNI NPGNDDNQYW SGGGTSNTTA WTDLSGFSSS STTSNPL

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MVFSSIPAYH DPSNWQQFLP PPLPPPQTLP PPSQPHGVGG SGSIRPGSMA DRARMANIPM  60
PETSLKCPRC ESTNTKFCYF NNYSLTQPRH FCKTCRRYWT RGGALRNVPV GGGCRRNKRS  120
KGSSSSKSPV SSDRQTGSST PSGSSTSSLP SNNTLAPPDI IGLTNQVPSL RLMAPLHHHL  180
TDFAEMGFNY GALNYAAMGG GGDFNFQIGS SSTGSLGRLP TDGMMDHQWR LQQASQFPFM  240
ATAGLDPSQP PPPAGLFESG GVDALGYHHH LRTKSTTSGL ASQLASVKME DHQSTEMNLS  300
KQLLGISSNI NPGNDDNQYW SGGGTSNTTA WTDLSGFSSS STTSNPL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00295	DAP	Transfer from AT2G37590	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015897478.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015897478.1	0.0	dof zinc finger protein DOF5.1-like isoform X2
TrEMBL	A0A2I4FI63	1e-116	A0A2I4FI63_JUGRE; dof zinc finger protein DOF5.1-like
STRING	EOY07547	1e-106	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.2	3e-41	OBF-binding protein 3