PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015897477.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Dof

Protein Properties

Length: 362aa MW: 38695.9 Da PI: 9.007

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015897477.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.9	1e-38	77	136	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e++lkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ XP_015897477.1 77 ETSLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 136 6789*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	60	125	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-32	79	134	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.544	80	134	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	82	118	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MVFSSIPAYH DPSNWQQQPN QSTPGTHHTN SQFLPPPLPP PQTLPPPSQP HGVGGSGSIR 60 PGSMADRARM ANIPMPETSL KCPRCESTNT KFCYFNNYSL TQPRHFCKTC RRYWTRGGAL 120 RNVPVGGGCR RNKRSKGSSS SKSPVSSDRQ TGSSTPSGSS TSSLPSNNTL APPDIIGLTN 180 QVPSLRLMAP LHHHLTDFAE MGFNYGALNY AAMGGGGDFN FQIGSSSTGS LGRLPTDGMM 240 DHQWRLQQAS QFPFMATAGL DPSQPPPPAG LFESGGVDAL GYHHHLRTKS TTSGLASQLA 300 SVKMEDHQST EMNLSKQLLG ISSNINPGND DNQYWSGGGT SNTTAWTDLS GFSSSSTTSN 360 PL

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MVFSSIPAYH DPSNWQQQPN QSTPGTHHTN SQFLPPPLPP PQTLPPPSQP HGVGGSGSIR  60
PGSMADRARM ANIPMPETSL KCPRCESTNT KFCYFNNYSL TQPRHFCKTC RRYWTRGGAL  120
RNVPVGGGCR RNKRSKGSSS SKSPVSSDRQ TGSSTPSGSS TSSLPSNNTL APPDIIGLTN  180
QVPSLRLMAP LHHHLTDFAE MGFNYGALNY AAMGGGGDFN FQIGSSSTGS LGRLPTDGMM  240
DHQWRLQQAS QFPFMATAGL DPSQPPPPAG LFESGGVDAL GYHHHLRTKS TTSGLASQLA  300
SVKMEDHQST EMNLSKQLLG ISSNINPGND DNQYWSGGGT SNTTAWTDLS GFSSSSTTSN  360
PL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00295	DAP	Transfer from AT2G37590	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015897477.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015897477.1	0.0	dof zinc finger protein DOF5.1-like isoform X1
TrEMBL	A0A2I4FI63	1e-118	A0A2I4FI63_JUGRE; dof zinc finger protein DOF5.1-like
STRING	EOY07547	1e-109	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.2	2e-45	OBF-binding protein 3