PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015897345.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | GRF | ||||||||
Protein Properties | Length: 328aa MW: 37138.8 Da PI: 9.1721 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 72.6 | 4.4e-23 | 66 | 109 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++ +++k+CErH++rgr rsrk +e XP_015897345.1 66 DPEPGRCRRTDGKKWRCSKDAHPDSKYCERHMNRGRYRSRKLVE 109 79***************************************987 PP | |||||||
2 | QLQ | 60.3 | 5.5e-21 | 4 | 40 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+FT aQ+q+L++Q+l++KyL a++PvPp+Ll++i+k XP_015897345.1 4 SPFTVAQWQELEHQALIFKYLKAGLPVPPDLLAPIRK 40 89*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.6E-12 | 4 | 40 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.8E-15 | 5 | 39 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.988 | 5 | 40 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.721 | 66 | 110 | IPR014977 | WRC domain |
Pfam | PF08879 | 7.3E-20 | 67 | 109 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MSGSPFTVAQ WQELEHQALI FKYLKAGLPV PPDLLAPIRK SFQLTSPRFF RHPTLGYCSY 60 FGKKIDPEPG RCRRTDGKKW RCSKDAHPDS KYCERHMNRG RYRSRKLVEL KTNSQSLSTV 120 SSDIATGSNT SSGSFQNMPL HSVGNRRALC LPSQVVVDPL PYGISNNEYR CYRGLNPEAE 180 KRNFLMEASG NMSLEINNTV DNSWRLMTSH VPMNSSEPRN SSLFPSNSRQ LETFQDIEPL 240 NVDAAMPKQE QYRCFFGKDL GSLESPKEEH QLLQPLFDPW PKMRDLGSHI DDHRSNKNLV 300 TATQLSMSSP TASNLFARSA QSPNDAYG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015897345.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015897345.1 | 0.0 | growth-regulating factor 4-like isoform X2 | ||||
Refseq | XP_015901326.1 | 0.0 | growth-regulating factor 4-like isoform X2 | ||||
TrEMBL | A0A2P6PAZ9 | 1e-132 | A0A2P6PAZ9_ROSCH; Putative transcription factor interactor and regulator C3H-WRC/GRF family | ||||
STRING | XP_008238100.1 | 1e-127 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4781 | 29 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 5e-42 | growth-regulating factor 5 |