PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896943.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 350aa    MW: 38420.2 Da    PI: 7.4752
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896943.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.3e-0896120126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC+ f++ GtC+y  +C+FaH+
  XP_015896943.1  96 FKTKLCCKFRA-GTCPYITNCNFAHS 120
                     69*********.*************8 PP
2zf-CCCH18.63.3e-06170195126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     yk + C+ f+    C+yGd+C+F H+
  XP_015896943.1 170 YKGRHCKKFYTEEGCPYGDNCTFLHD 195
                     78888********************7 PP
3zf-CCCH43.55.2e-14231256126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  XP_015896943.1 231 WKTRICNKWELTGYCPFGSKCHFAHG 256
                     8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.5E-1493128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.1E-893126IPR000571Zinc finger, CCCH-type
SMARTSM003560.003595121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8495122IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-596120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-9167197IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-7168197IPR000571Zinc finger, CCCH-type
SMARTSM003560.058169196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23169197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-16227260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-10228261IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-9230257IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422230258IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-11231256IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEYGRDGGFS SGNVVQIMTG SGGENWGGGD QVVWATEDDY RVWNNGDASG DAFSNSSYEQ  60
RQSQTRSGSE PPNKKSKNSQ DVTSSNRSKA IGKMFFKTKL CCKFRAGTCP YITNCNFAHS  120
IEELRRPPPN WQEIVAAHEE DKAVSSEPRE EFQIPSIGSS NFAVETQRSY KGRHCKKFYT  180
EEGCPYGDNC TFLHDEQSKN RESVAISLGP GGYGGAAAAA SGGTNNKPSN WKTRICNKWE  240
LTGYCPFGSK CHFAHGVAEL HRYGGGLVDN EVRDSSVSSD NKQVGVPSKT PADTVVSSVP  300
SVPHPDVYHI GVPSQRSSVV IQRPGQRTHQ KWKGPDKISR IYGDWIDDIE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896943.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896943.10.0zinc finger CCCH domain-containing protein 12 isoform X2
SwissprotQ84UQ31e-130C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A2N9GAB30.0A0A2N9GAB3_FAGSY; Uncharacterized protein
STRINGXP_010096556.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-126C3H family protein