PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896942.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 373aa    MW: 40987.4 Da    PI: 8.2933
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896942.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-0896120126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC+ f++ GtC+y  +C+FaH+
  XP_015896942.1  96 FKTKLCCKFRA-GTCPYITNCNFAHS 120
                     69*********.*************8 PP

2zf-CCCH18.53.6e-06170195126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     yk + C+ f+    C+yGd+C+F H+
  XP_015896942.1 170 YKGRHCKKFYTEEGCPYGDNCTFLHD 195
                     77888********************7 PP

3zf-CCCH43.45.6e-14231256126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  XP_015896942.1 231 WKTRICNKWELTGYCPFGSKCHFAHG 256
                     8************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.9E-1493128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.89E-893126IPR000571Zinc finger, CCCH-type
SMARTSM003560.003595121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8495122IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-596120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-9167197IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-7168197IPR000571Zinc finger, CCCH-type
SMARTSM003560.058169196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23169197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-15227259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-9228259IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-9230257IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422230258IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-11231256IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEYGRDGGFS SGNVVQIMTG SGGENWGGGD QVVWATEDDY RVWNNGDASG DAFSNSSYEQ  60
RQSQTRSGSE PPNKKSKNSQ DVTSSNRSKA IGKMFFKTKL CCKFRAGTCP YITNCNFAHS  120
IEELRRPPPN WQEIVAAHEE DKAVSSEPRE EFQIPSIGSS NFAVETQRSY KGRHCKKFYT  180
EEGCPYGDNC TFLHDEQSKN RESVAISLGP GGYGGAAAAA SGGTNNKPSN WKTRICNKWE  240
LTGYCPFGSK CHFAHGVADA FPICHCLSFI RIIGSRKSHG KKLHRYGGGL VDNEVRDSSV  300
SSDNKQVGVP SKTPADTVVS SVPSVPHPDV YHIGVPSQRS SVVIQRPGQR THQKWKGPDK  360
ISRIYGDWID DIE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896942.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896942.10.0zinc finger CCCH domain-containing protein 56 isoform X1
SwissprotQ84UQ31e-124C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A2N9GAB30.0A0A2N9GAB3_FAGSY; Uncharacterized protein
STRINGXP_010096556.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-120C3H family protein