PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015896942.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C3H | ||||||||
Protein Properties | Length: 373aa MW: 40987.4 Da PI: 8.2933 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.9 | 3.6e-08 | 96 | 120 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ XP_015896942.1 96 FKTKLCCKFRA-GTCPYITNCNFAHS 120 69*********.*************8 PP | |||||||
2 | zf-CCCH | 18.5 | 3.6e-06 | 170 | 195 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_015896942.1 170 YKGRHCKKFYTEEGCPYGDNCTFLHD 195 77888********************7 PP | |||||||
3 | zf-CCCH | 43.4 | 5.6e-14 | 231 | 256 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_015896942.1 231 WKTRICNKWELTGYCPFGSKCHFAHG 256 8************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-14 | 93 | 128 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.89E-8 | 93 | 126 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0035 | 95 | 121 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.84 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-5 | 96 | 120 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-9 | 167 | 197 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.26E-7 | 168 | 197 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.058 | 169 | 196 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.23 | 169 | 197 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-15 | 227 | 259 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-9 | 228 | 259 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-9 | 230 | 257 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.422 | 230 | 258 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-11 | 231 | 256 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MEYGRDGGFS SGNVVQIMTG SGGENWGGGD QVVWATEDDY RVWNNGDASG DAFSNSSYEQ 60 RQSQTRSGSE PPNKKSKNSQ DVTSSNRSKA IGKMFFKTKL CCKFRAGTCP YITNCNFAHS 120 IEELRRPPPN WQEIVAAHEE DKAVSSEPRE EFQIPSIGSS NFAVETQRSY KGRHCKKFYT 180 EEGCPYGDNC TFLHDEQSKN RESVAISLGP GGYGGAAAAA SGGTNNKPSN WKTRICNKWE 240 LTGYCPFGSK CHFAHGVADA FPICHCLSFI RIIGSRKSHG KKLHRYGGGL VDNEVRDSSV 300 SSDNKQVGVP SKTPADTVVS SVPSVPHPDV YHIGVPSQRS SVVIQRPGQR THQKWKGPDK 360 ISRIYGDWID DIE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015896942.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015896942.1 | 0.0 | zinc finger CCCH domain-containing protein 56 isoform X1 | ||||
Swissprot | Q84UQ3 | 1e-124 | C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | A0A2N9GAB3 | 0.0 | A0A2N9GAB3_FAGSY; Uncharacterized protein | ||||
STRING | XP_010096556.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7751 | 33 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-120 | C3H family protein |