PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896887.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 356aa    MW: 40102 Da    PI: 9.9845
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896887.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.5e-14149200155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  XP_015896887.1 149 QRMTHIAVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 200
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.9E-17147216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.81E-13147204No hitNo description
PROSITE profilePS5088815.199148199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-11149200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-14149213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-10154205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MIQSWFNQKT ELKKKKKKSF LVFSTGNAKL KIVMALEALS SNELLNFIIY DTLSAGAAPY  60
SSQLDYHSSE TSTFLLENGL KPQEQQGGDA ALTMENHTTL PSRKRQSYAA ASSEFSNQLM  120
MKQNLGAQGR KKRKRKPRVC KNREEAETQR MTHIAVERNR RKQMNEHLAV LRSLMPESYV  180
QRGDQASIVG GAIEFVKELE HLLQSLEAQK LQLIQQGIGG QEENSNSSTT TANTKFLTPP  240
FAQFFLYPQY TWSQNSKKYT SKTKAAIADI EVTLIETHAS LRILSRRSPK QLFKLVAGFQ  300
TLNLSILHLN VITMNALVLY SVSVKLEEGC LLTSVDDIAA AVHHMLRIIE EEAALY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129134RKKRKR
2129135RKKRKRK
3130135KKRKRK
4149160RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896887.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896887.10.0transcription factor bHLH71-like
SwissprotQ9C7T47e-74BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2N9GA131e-146A0A2N9GA13_FAGSY; Uncharacterized protein
STRINGcassava4.1_012613m1e-143(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]