PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015896743.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

SRS

Protein Properties

Length: 433aa MW: 47228.5 Da PI: 6.7092

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015896743.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	26	2.7e-08	92	127	5	40
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvk 40 + +C++CGn a+ C +e C+ CC C hv XP_015896743.1 92 KPKCKQCGNVARSRCPYESCKSCCAKAQNPCYIHVL 127 569*******************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.3E-5	94	131	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MAAPSPALSS NSSDTATATT TAAVASTAVT ATATAANTAA LPAAKTTTAA VSATATASAP 60 APAAAAASSI PAANTVVHRT DTPPKTLRGL NKPKCKQCGN VARSRCPYES CKSCCAKAQN 120 PCYIHVLKAN ATFPDKTPPS NSTLFDQHST EASPSGNSHR VASLRQLSNT FAQFNNVQIP 180 LRSRKPMTRK DAAAINEWRF SKLKEYKDRN IEVEDEAFDR YMQNVNLLEE LFSVKSIPER 240 SMEDVNSIPE RSMEDGTSNH DPTSMDDETG PTVSGLTLML RSDPVRTDNF RERMKQIVDQ 300 GLNKLQKCEL DYALNEPINQ NELDKGPKRT KDLWAERASA LSDLNDRLNK ARNDEDLKYC 360 LELKSQLFSH HTSSSDVGSN SEILKDQNAN NNLESTKVSN YSLSRLVTSV EIDQETLRNV 420 DAHFSSLQQI EGL

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MAAPSPALSS NSSDTATATT TAAVASTAVT ATATAANTAA LPAAKTTTAA VSATATASAP  60
APAAAAASSI PAANTVVHRT DTPPKTLRGL NKPKCKQCGN VARSRCPYES CKSCCAKAQN  120
PCYIHVLKAN ATFPDKTPPS NSTLFDQHST EASPSGNSHR VASLRQLSNT FAQFNNVQIP  180
LRSRKPMTRK DAAAINEWRF SKLKEYKDRN IEVEDEAFDR YMQNVNLLEE LFSVKSIPER  240
SMEDVNSIPE RSMEDGTSNH DPTSMDDETG PTVSGLTLML RSDPVRTDNF RERMKQIVDQ  300
GLNKLQKCEL DYALNEPINQ NELDKGPKRT KDLWAERASA LSDLNDRLNK ARNDEDLKYC  360
LELKSQLFSH HTSSSDVGSN SEILKDQNAN NNLESTKVSN YSLSRLVTSV EIDQETLRNV  420
DAHFSSLQQI EGL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015896743.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015896743.1	0.0	uncharacterized protein LOC107430424
TrEMBL	A0A315A1E8	1e-172	A0A315A1E8_PRUYE; Uncharacterized protein
STRING	XP_008373623.1	1e-173	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7690	16	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	4e-97