PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015896666.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Trihelix

Protein Properties

Length: 370aa MW: 41870.9 Da PI: 10.3115

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015896666.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62.9	7.2e-20	28	117	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++e+++Liea+r+++ +lrr++l++ +W+++s+ + r+ ++ +s++qC++k+e+l+kryk +k+++ + + s++++f+ +e XP_015896666.1 28 CWTQDETHVLIEAYRDRWYALRRRSLRALDWDAISAIVaRRCPLtlpPKSSIQCRHKMEKLRKRYKTEKQRSVANPGRFFSSWVLFQLME 117 8*********************************9954444434579********************998899999**9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.8E-20	27	119	No hit	No description
PROSITE profile	PS50090	6.017	29	89	IPR017877	Myb-like domain
SMART	SM00595	1.6E-4	36	124	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MSTASPPSPS PSPPPLPQPT TRKFPLPCWT QDETHVLIEA YRDRWYALRR RSLRALDWDA 60 ISAIVARRCP LTLPPKSSIQ CRHKMEKLRK RYKTEKQRSV ANPGRFFSSW VLFQLMESLE 120 NGSSFSGLGA HPDQGVDFGG GISMETFPAK KSVKIEKNSE HYFDSGRDSG TGFAVKTQFL 180 HQNLIPQACE LKGDRNLVPP GFRPNVNGAT GRNFYPEFKS DHSHEVNGGG RSHAKVFSNR 240 DFAHPGFRSR KHDNVDRIAD NGVDFGESKG YSSLLRSGDA KKKCGVGNKR KVDAVVDMVS 300 SIKMMGEEFM KVEMMKMEMA REIEKMRMEM EMKRYKFMVE SQQQIVDAFA NALSEKKKKK 360 TKVKVELPDG

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MSTASPPSPS PSPPPLPQPT TRKFPLPCWT QDETHVLIEA YRDRWYALRR RSLRALDWDA  60
ISAIVARRCP LTLPPKSSIQ CRHKMEKLRK RYKTEKQRSV ANPGRFFSSW VLFQLMESLE  120
NGSSFSGLGA HPDQGVDFGG GISMETFPAK KSVKIEKNSE HYFDSGRDSG TGFAVKTQFL  180
HQNLIPQACE LKGDRNLVPP GFRPNVNGAT GRNFYPEFKS DHSHEVNGGG RSHAKVFSNR  240
DFAHPGFRSR KHDNVDRIAD NGVDFGESKG YSSLLRSGDA KKKCGVGNKR KVDAVVDMVS  300
SIKMMGEEFM KVEMMKMEMA REIEKMRMEM EMKRYKFMVE SQQQIVDAFA NALSEKKKKK  360
TKVKVELPDG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015896666.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015896666.1	0.0	protein FIP2

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13797	14	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	3e-33	Trihelix family protein