PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015896573.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | ERF | ||||||||
Protein Properties | Length: 275aa MW: 30891.4 Da PI: 6.3178 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.3 | 8e-18 | 89 | 138 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+ ++g XP_015896573.1 89 TYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAAITIKG 138 69****998.**********843...6**********************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.8E-12 | 89 | 138 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-21 | 89 | 147 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.248 | 89 | 146 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.5E-32 | 89 | 147 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-37 | 89 | 152 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.20E-31 | 90 | 148 | No hit | No description |
PRINTS | PR00367 | 1.2E-10 | 90 | 101 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 112 | 128 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MRRLPISFSF PLKQAISSHF LLNQDLPTTM KDQFNIEWEV QNSSSSSIPV LSKSICTEFK 60 AQKSSRGASG SEAKRNVKNN RNNDGKHPTY RGVRMRQWGK WVSEIREPRK KSRIWLGTFP 120 TAEMAARAHD VAAITIKGNS AFLNFPELAR ELPRPATSSR KDIQAAAAKA AAFDYRRSHE 180 TPHDDEATEP RQDHEIINVS PSPTATVAYP ETHDSSAASP LTDEDDAFFN LPDLLEDVNN 240 HQVDEPSYSL PWPLAGAEPA ETGLRLEEPF LWDYC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-18 | 78 | 146 | 3 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015896573.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015896573.1 | 0.0 | ethylene-responsive transcription factor ERF038 | ||||
Swissprot | Q8LBQ7 | 1e-54 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A061G3Z0 | 2e-75 | A0A061G3Z0_THECC; Integrase-type DNA-binding superfamily protein, putative | ||||
TrEMBL | A0A2N9F0E7 | 3e-75 | A0A2N9F0E7_FAGSY; Uncharacterized protein | ||||
STRING | EOY24281 | 4e-76 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 2e-53 | ERF family protein |
Publications ? help Back to Top | |||
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