PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896388.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 356aa    MW: 39392.6 Da    PI: 5.5156
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896388.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-19137187155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +g+W+AeIrdp     r  r++lg+++taeeAa  +++a+ +l+g
  XP_015896388.1 137 KKFRGVRQRP-WGKWAAEIRDPL----RrVRVWLGTYDTAEEAAMVYDNAAIQLRG 187
                     59********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.1E-13138187IPR001471AP2/ERF domain
SMARTSM003801.0E-37138201IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-30138195IPR001471AP2/ERF domain
PROSITE profilePS5103223.657138195IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-21138195IPR016177DNA-binding domain
PRINTSPR003672.1E-10139150IPR001471AP2/ERF domain
CDDcd000182.31E-30139195No hitNo description
PRINTSPR003672.1E-10161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MNRGPIKYTE HRNHTKLTAP LPPSPTTTTN RNILLPEMVM RPPRIVRISV TDGDATDSSS  60
DDDEQRGRVF VRRQRVKKFV NEIAIESCSL TENDGAGGVW RSSRSSRTCR KRFAGGGNTR  120
ITATHQSLKA PAKTAAKKFR GVRQRPWGKW AAEIRDPLRR VRVWLGTYDT AEEAAMVYDN  180
AAIQLRGPDA LTNFATPPHP PAKPSPEIKE PAVSSGYNSG DESHNNLCSP TSVLRCLSPS  240
NEDSESQSPR AFPNFAEVQD IREDSSVSEN FSEFSDYSSF ETLIPNDIFD FRSSIPDFFE  300
ETRSLRDGGV LGDDFTDIVA AGSGFDFGFG GSKTWPADDY FQDIGDLFSS DPLVAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19137194462ATERF1
3gcc_A2e-19137194462ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896388.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896388.10.0ethylene-responsive transcription factor CRF2
TrEMBLA0A314UYA81e-134A0A314UYA8_PRUYE; Ethylene-responsive transcription factor CRF2
STRINGXP_009336252.11e-133(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.26e-50cytokinin response factor 2